miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5306 3' -55.6 NC_001798.1 + 89677 0.66 0.936865
Target:  5'- cGCGcUGCGCGGGCC-CGgagGCGUaguagGCGg -3'
miRNA:   3'- -UGCaGUGUGCCCGGcGUa--UGCAa----CGC- -5'
5306 3' -55.6 NC_001798.1 + 86150 0.66 0.936865
Target:  5'- aGCG-CAcCGCgGGGCgCGCAUGCGcgacGCGg -3'
miRNA:   3'- -UGCaGU-GUG-CCCG-GCGUAUGCaa--CGC- -5'
5306 3' -55.6 NC_001798.1 + 143090 0.66 0.931909
Target:  5'- uUGUUGCuGCGuGGUaCGCAUguGCGUUGCGg -3'
miRNA:   3'- uGCAGUG-UGC-CCG-GCGUA--UGCAACGC- -5'
5306 3' -55.6 NC_001798.1 + 58692 0.66 0.931909
Target:  5'- cCGUCA---GGGCCGCG-GCGgcGCGg -3'
miRNA:   3'- uGCAGUgugCCCGGCGUaUGCaaCGC- -5'
5306 3' -55.6 NC_001798.1 + 26325 0.66 0.931909
Target:  5'- uACGUggCGCugGGGCgcgaCGCcGUGCGcgGCGg -3'
miRNA:   3'- -UGCA--GUGugCCCG----GCG-UAUGCaaCGC- -5'
5306 3' -55.6 NC_001798.1 + 66420 0.66 0.928821
Target:  5'- cGCGUCGCAuacucccucagaugaUaGGGCgUGUAUGCGUUGgGg -3'
miRNA:   3'- -UGCAGUGU---------------G-CCCG-GCGUAUGCAACgC- -5'
5306 3' -55.6 NC_001798.1 + 61851 0.66 0.926715
Target:  5'- cCGgggaACGCGGGCCGCcgGCccagcccgGCGg -3'
miRNA:   3'- uGCag--UGUGCCCGGCGuaUGcaa-----CGC- -5'
5306 3' -55.6 NC_001798.1 + 131005 0.66 0.926715
Target:  5'- uCGcCAUACGGGCCGCc-GCcagGCGa -3'
miRNA:   3'- uGCaGUGUGCCCGGCGuaUGcaaCGC- -5'
5306 3' -55.6 NC_001798.1 + 1650 0.66 0.926715
Target:  5'- cGCGUCGgggUACaGGCgCGCGUGCGcgGCc -3'
miRNA:   3'- -UGCAGU---GUGcCCG-GCGUAUGCaaCGc -5'
5306 3' -55.6 NC_001798.1 + 104381 0.66 0.921284
Target:  5'- uUGUCGagGCGGuCCGCGUacACGUUGCc -3'
miRNA:   3'- uGCAGUg-UGCCcGGCGUA--UGCAACGc -5'
5306 3' -55.6 NC_001798.1 + 16064 0.66 0.915616
Target:  5'- -gGUCGCugGgGGCgGCGgGCGUcUGUGg -3'
miRNA:   3'- ugCAGUGugC-CCGgCGUaUGCA-ACGC- -5'
5306 3' -55.6 NC_001798.1 + 23211 0.66 0.915616
Target:  5'- cGCG--ACGCGGGCCGC-UGgGUccGCGg -3'
miRNA:   3'- -UGCagUGUGCCCGGCGuAUgCAa-CGC- -5'
5306 3' -55.6 NC_001798.1 + 63277 0.66 0.915616
Target:  5'- gGCGgaaUACAgGGGCUGCAUAUGgaucagGCc -3'
miRNA:   3'- -UGCa--GUGUgCCCGGCGUAUGCaa----CGc -5'
5306 3' -55.6 NC_001798.1 + 111823 0.66 0.915616
Target:  5'- gGCGUC-CAgGGGCUGgc-GCGggGCGg -3'
miRNA:   3'- -UGCAGuGUgCCCGGCguaUGCaaCGC- -5'
5306 3' -55.6 NC_001798.1 + 145024 0.66 0.909711
Target:  5'- uCGUC-CGCGGGgguCCGCAUGCaagGCa -3'
miRNA:   3'- uGCAGuGUGCCC---GGCGUAUGcaaCGc -5'
5306 3' -55.6 NC_001798.1 + 102640 0.66 0.909711
Target:  5'- cCGUCGC-CGGGCgGCGgaggggcCGggGCGc -3'
miRNA:   3'- uGCAGUGuGCCCGgCGUau-----GCaaCGC- -5'
5306 3' -55.6 NC_001798.1 + 145797 0.66 0.909711
Target:  5'- -aGgagCGCGCGGGCgGCAgaaacgcggGCGcgGCGg -3'
miRNA:   3'- ugCa--GUGUGCCCGgCGUa--------UGCaaCGC- -5'
5306 3' -55.6 NC_001798.1 + 49994 0.67 0.903572
Target:  5'- cCGUCAUGCGGGagcaCGCGUAUagccGCGg -3'
miRNA:   3'- uGCAGUGUGCCCg---GCGUAUGcaa-CGC- -5'
5306 3' -55.6 NC_001798.1 + 4822 0.67 0.897201
Target:  5'- cCGUgcCACccgaaccCGGGCCGCGcgGCGggGCGa -3'
miRNA:   3'- uGCA--GUGu------GCCCGGCGUa-UGCaaCGC- -5'
5306 3' -55.6 NC_001798.1 + 68104 0.67 0.8906
Target:  5'- gACGgaCGCACgGGGCCGCGcACGgccaagacgGCGa -3'
miRNA:   3'- -UGCa-GUGUG-CCCGGCGUaUGCaa-------CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.