miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5306 5' -58.7 NC_001798.1 + 116337 0.66 0.828913
Target:  5'- gGCaCGAGcCCGUcUACgCGGCGGCGUg- -3'
miRNA:   3'- -CG-GUUUaGGCGcAUG-GCCGCCGCGgu -5'
5306 5' -58.7 NC_001798.1 + 82163 0.66 0.828913
Target:  5'- aGCCGAccacgcggCCGCGguuuccGCCGcaGCGGCGgCAg -3'
miRNA:   3'- -CGGUUua------GGCGCa-----UGGC--CGCCGCgGU- -5'
5306 5' -58.7 NC_001798.1 + 29003 0.66 0.828913
Target:  5'- gGCCAA--CCGCGcgccGCCGcGCGG-GCCc -3'
miRNA:   3'- -CGGUUuaGGCGCa---UGGC-CGCCgCGGu -5'
5306 5' -58.7 NC_001798.1 + 128152 0.66 0.828913
Target:  5'- cGCCAccUgCGCGgccUGCUGcGCGGCGuCCGc -3'
miRNA:   3'- -CGGUuuAgGCGC---AUGGC-CGCCGC-GGU- -5'
5306 5' -58.7 NC_001798.1 + 97019 0.66 0.823953
Target:  5'- cGCCGAuagcucuucuGUCCGCGaggaggccgacgcccUGCUGGaGGCGCa- -3'
miRNA:   3'- -CGGUU----------UAGGCGC---------------AUGGCCgCCGCGgu -5'
5306 5' -58.7 NC_001798.1 + 23286 0.66 0.820613
Target:  5'- aGCCugucgCCGCG-ACCccCGGCGCCc -3'
miRNA:   3'- -CGGuuua-GGCGCaUGGccGCCGCGGu -5'
5306 5' -58.7 NC_001798.1 + 74018 0.66 0.820613
Target:  5'- cCCAAcuUCCuggaGUAcCCGGCGGCGCgCGg -3'
miRNA:   3'- cGGUUu-AGGcg--CAU-GGCCGCCGCG-GU- -5'
5306 5' -58.7 NC_001798.1 + 86851 0.66 0.820613
Target:  5'- gGCCcgg-CCGCGacaagacCCGGCGGCgGUCGc -3'
miRNA:   3'- -CGGuuuaGGCGCau-----GGCCGCCG-CGGU- -5'
5306 5' -58.7 NC_001798.1 + 129690 0.66 0.820613
Target:  5'- cGCCGGggCCccaGUACCGGC-GCGCa- -3'
miRNA:   3'- -CGGUUuaGGcg-CAUGGCCGcCGCGgu -5'
5306 5' -58.7 NC_001798.1 + 58678 0.66 0.820613
Target:  5'- cGCCAccaccgCCGcCGUcaggGCCgcGGCGGCGCgGg -3'
miRNA:   3'- -CGGUuua---GGC-GCA----UGG--CCGCCGCGgU- -5'
5306 5' -58.7 NC_001798.1 + 111800 0.66 0.820613
Target:  5'- -aCGAcAUCCGUGcGCCGGUcgcgGGCGuCCAg -3'
miRNA:   3'- cgGUU-UAGGCGCaUGGCCG----CCGC-GGU- -5'
5306 5' -58.7 NC_001798.1 + 152500 0.66 0.812149
Target:  5'- cCCAAuagCCGCGcgccCCGGCGGgGgCGg -3'
miRNA:   3'- cGGUUua-GGCGCau--GGCCGCCgCgGU- -5'
5306 5' -58.7 NC_001798.1 + 121618 0.66 0.812149
Target:  5'- cGCCAAAcaCGCGaUACgcggccgaCGGCGcGCGCCu -3'
miRNA:   3'- -CGGUUUagGCGC-AUG--------GCCGC-CGCGGu -5'
5306 5' -58.7 NC_001798.1 + 53171 0.66 0.812149
Target:  5'- cGCCAAcgCgGgCGUccCCGaGCGGCGCa- -3'
miRNA:   3'- -CGGUUuaGgC-GCAu-GGC-CGCCGCGgu -5'
5306 5' -58.7 NC_001798.1 + 47643 0.66 0.812149
Target:  5'- cCCAgagAGUCCGCGcgacgacuuCCGccGCGGCGCUg -3'
miRNA:   3'- cGGU---UUAGGCGCau-------GGC--CGCCGCGGu -5'
5306 5' -58.7 NC_001798.1 + 146466 0.66 0.812149
Target:  5'- aGCCGAGcagcgCCGCGggcuCCGG-GGCcggGCCGg -3'
miRNA:   3'- -CGGUUUa----GGCGCau--GGCCgCCG---CGGU- -5'
5306 5' -58.7 NC_001798.1 + 135711 0.66 0.812149
Target:  5'- cGCgGGG-CCGCGUAcgcCCGGCGGC-CgAg -3'
miRNA:   3'- -CGgUUUaGGCGCAU---GGCCGCCGcGgU- -5'
5306 5' -58.7 NC_001798.1 + 93773 0.66 0.812149
Target:  5'- cCCAAGUUCGCGagcgccgcCCGG-GGgGCCAu -3'
miRNA:   3'- cGGUUUAGGCGCau------GGCCgCCgCGGU- -5'
5306 5' -58.7 NC_001798.1 + 56700 0.66 0.812149
Target:  5'- aCCGAugCCGUGccGCUGGCGuuGCGCCGa -3'
miRNA:   3'- cGGUUuaGGCGCa-UGGCCGC--CGCGGU- -5'
5306 5' -58.7 NC_001798.1 + 49574 0.66 0.812149
Target:  5'- cGCgAGA-CCGCGcGCCuGGCGcGCGUCc -3'
miRNA:   3'- -CGgUUUaGGCGCaUGG-CCGC-CGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.