miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5310 5' -56.8 NC_001798.1 + 91462 0.66 0.912534
Target:  5'- aCCCAacaGcucGGGGuGGGAUGGCGGuGCc -3'
miRNA:   3'- gGGGUg--Cua-CUCC-CCCUGCCGUUuCG- -5'
5310 5' -56.8 NC_001798.1 + 27409 0.66 0.912534
Target:  5'- aCUgGCGucuucGGGGGGGCGG-GGAGCu -3'
miRNA:   3'- gGGgUGCuac--UCCCCCUGCCgUUUCG- -5'
5310 5' -56.8 NC_001798.1 + 147203 0.66 0.912534
Target:  5'- gCCCgGCGGUccGGcccGGGccccCGGCGGAGCg -3'
miRNA:   3'- -GGGgUGCUAcuCC---CCCu---GCCGUUUCG- -5'
5310 5' -56.8 NC_001798.1 + 9164 0.66 0.912534
Target:  5'- gCCCGCGccGGGGGGcAgGGUcucuGGCg -3'
miRNA:   3'- gGGGUGCuaCUCCCCcUgCCGuu--UCG- -5'
5310 5' -56.8 NC_001798.1 + 34017 0.66 0.912534
Target:  5'- gCCCaCGCGGUaGAGgaaGGGGACGGgcgccacaccCAcGGCu -3'
miRNA:   3'- -GGG-GUGCUA-CUC---CCCCUGCC----------GUuUCG- -5'
5310 5' -56.8 NC_001798.1 + 49394 0.66 0.912534
Target:  5'- uUCCGCGGUGAGcugcGGGcGCGGgAggaGAGCu -3'
miRNA:   3'- gGGGUGCUACUC----CCCcUGCCgU---UUCG- -5'
5310 5' -56.8 NC_001798.1 + 68460 0.66 0.912534
Target:  5'- -aCCGCGggGAuugcgagcucgcGGccGGGACGGC-GAGCg -3'
miRNA:   3'- ggGGUGCuaCU------------CC--CCCUGCCGuUUCG- -5'
5310 5' -56.8 NC_001798.1 + 17949 0.66 0.910776
Target:  5'- cCCCCACcuuacccguucgcaGGUccggacgucGGGGGGGGCuGCGcGGCc -3'
miRNA:   3'- -GGGGUG--------------CUA---------CUCCCCCUGcCGUuUCG- -5'
5310 5' -56.8 NC_001798.1 + 30756 0.66 0.908998
Target:  5'- aCCCGCGugGAGGccgaggcggccgugcGGGcCGGCAcGGCc -3'
miRNA:   3'- gGGGUGCuaCUCC---------------CCCuGCCGUuUCG- -5'
5310 5' -56.8 NC_001798.1 + 138574 0.66 0.906596
Target:  5'- gUCCACag-GGGGGGGcACaGCAccAGGCa -3'
miRNA:   3'- gGGGUGcuaCUCCCCC-UGcCGU--UUCG- -5'
5310 5' -56.8 NC_001798.1 + 57509 0.66 0.906596
Target:  5'- gCCUUGCGGgguugGGGGGGcGugGGUgugguucggGGGGCg -3'
miRNA:   3'- -GGGGUGCUa----CUCCCC-CugCCG---------UUUCG- -5'
5310 5' -56.8 NC_001798.1 + 150415 0.66 0.906596
Target:  5'- -aCCACG--GGGGcGGcGGCGGCGcgGGGCg -3'
miRNA:   3'- ggGGUGCuaCUCC-CC-CUGCCGU--UUCG- -5'
5310 5' -56.8 NC_001798.1 + 105665 0.66 0.90043
Target:  5'- -aCCACGuucuuUGAGGGGGGgaaaaaaGGgaGAGGCg -3'
miRNA:   3'- ggGGUGCu----ACUCCCCCUg------CCg-UUUCG- -5'
5310 5' -56.8 NC_001798.1 + 8888 0.66 0.90043
Target:  5'- gCgCugGcgGAGGGcGGA-GGCGAAGg -3'
miRNA:   3'- gGgGugCuaCUCCC-CCUgCCGUUUCg -5'
5310 5' -56.8 NC_001798.1 + 148422 0.66 0.90043
Target:  5'- gCgC-CGggGcGGGGGugGGCAcGGGCg -3'
miRNA:   3'- gGgGuGCuaCuCCCCCugCCGU-UUCG- -5'
5310 5' -56.8 NC_001798.1 + 27483 0.66 0.90043
Target:  5'- -gCCGCGcgGGGGcGGGcGCGGgaaaAAAGCc -3'
miRNA:   3'- ggGGUGCuaCUCC-CCC-UGCCg---UUUCG- -5'
5310 5' -56.8 NC_001798.1 + 27272 0.66 0.899801
Target:  5'- gCCCCguggcgcGCGggGGGGaGGGGCuGCcgcGAGCu -3'
miRNA:   3'- -GGGG-------UGCuaCUCC-CCCUGcCGu--UUCG- -5'
5310 5' -56.8 NC_001798.1 + 113468 0.66 0.898537
Target:  5'- aCCCGUGuuuUGGGGGuugugcgugaucauGGGCGGCGcGGCc -3'
miRNA:   3'- gGGGUGCu--ACUCCC--------------CCUGCCGUuUCG- -5'
5310 5' -56.8 NC_001798.1 + 96971 0.66 0.894041
Target:  5'- gCUgGCGcgGAccGcGGcGGGCGGCGGGGCc -3'
miRNA:   3'- gGGgUGCuaCU--C-CC-CCUGCCGUUUCG- -5'
5310 5' -56.8 NC_001798.1 + 89196 0.66 0.894041
Target:  5'- -gCCugGAUGAugcuGGGGuacaGGCuGGCAAAGUc -3'
miRNA:   3'- ggGGugCUACU----CCCC----CUG-CCGUUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.