miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5311 3' -50.2 NC_001798.1 + 53924 0.66 0.997711
Target:  5'- cGCGgGCCCAGcggcaccacgggcucGAUGCAGUGCaugGCCc- -3'
miRNA:   3'- -CGCaUGGGUU---------------UUGCGUUAUGg--CGGcu -5'
5311 3' -50.2 NC_001798.1 + 90785 0.66 0.997546
Target:  5'- cGCGUGCCguAGACGUGAa--CGgCGAc -3'
miRNA:   3'- -CGCAUGGguUUUGCGUUaugGCgGCU- -5'
5311 3' -50.2 NC_001798.1 + 22925 0.66 0.997546
Target:  5'- aCGagGCCgAcGACGCc--GCCGCCGAu -3'
miRNA:   3'- cGCa-UGGgUuUUGCGuuaUGGCGGCU- -5'
5311 3' -50.2 NC_001798.1 + 84215 0.66 0.997546
Target:  5'- cGCGcccCCCGGGGCGCcGUGggGCCGGu -3'
miRNA:   3'- -CGCau-GGGUUUUGCGuUAUggCGGCU- -5'
5311 3' -50.2 NC_001798.1 + 28951 0.66 0.997546
Target:  5'- cGCGaggGCCCG--GCGCcgccCCGCCGc -3'
miRNA:   3'- -CGCa--UGGGUuuUGCGuuauGGCGGCu -5'
5311 3' -50.2 NC_001798.1 + 93931 0.66 0.997546
Target:  5'- cGCGcgGCCaCcGAGCGCGucAUgGCCGAg -3'
miRNA:   3'- -CGCa-UGG-GuUUUGCGUuaUGgCGGCU- -5'
5311 3' -50.2 NC_001798.1 + 108454 0.66 0.997546
Target:  5'- cCGgcCUCGGAACGCGAgcCUGcCCGAg -3'
miRNA:   3'- cGCauGGGUUUUGCGUUauGGC-GGCU- -5'
5311 3' -50.2 NC_001798.1 + 134911 0.66 0.997546
Target:  5'- cCGUGCCgGccgcCGCc--GCCGCCGAg -3'
miRNA:   3'- cGCAUGGgUuuu-GCGuuaUGGCGGCU- -5'
5311 3' -50.2 NC_001798.1 + 142091 0.66 0.99746
Target:  5'- cGCGUAcagccuacaucacCCCAGGGCGUcgcuaacGAgcgcGCUGCCGGa -3'
miRNA:   3'- -CGCAU-------------GGGUUUUGCG-------UUa---UGGCGGCU- -5'
5311 3' -50.2 NC_001798.1 + 66509 0.66 0.997281
Target:  5'- cGCGUaguucaggaGCCCAAAgucguccuccgugagGCGgGGggcGCUGCCGAa -3'
miRNA:   3'- -CGCA---------UGGGUUU---------------UGCgUUa--UGGCGGCU- -5'
5311 3' -50.2 NC_001798.1 + 83745 0.66 0.997091
Target:  5'- aGCGgccCCCAGAAacaGCcccGCCGCCa- -3'
miRNA:   3'- -CGCau-GGGUUUUg--CGuuaUGGCGGcu -5'
5311 3' -50.2 NC_001798.1 + 57748 0.66 0.997091
Target:  5'- gGCGcGCCCGGcGCaGCGAggaggGuuGCCGGa -3'
miRNA:   3'- -CGCaUGGGUUuUG-CGUUa----UggCGGCU- -5'
5311 3' -50.2 NC_001798.1 + 11922 0.66 0.997091
Target:  5'- cGCGUugCCGuucGAAccCGCAGaagcgGCUGCCGc -3'
miRNA:   3'- -CGCAugGGU---UUU--GCGUUa----UGGCGGCu -5'
5311 3' -50.2 NC_001798.1 + 58396 0.66 0.997091
Target:  5'- cGCGUcagACCCucgcgcGGCGCAGgcgGCCaGCgCGAg -3'
miRNA:   3'- -CGCA---UGGGuu----UUGCGUUa--UGG-CG-GCU- -5'
5311 3' -50.2 NC_001798.1 + 124979 0.66 0.997091
Target:  5'- cGCGUGguCCCcGAGCaGCAcgGCgGCCa- -3'
miRNA:   3'- -CGCAU--GGGuUUUG-CGUuaUGgCGGcu -5'
5311 3' -50.2 NC_001798.1 + 1414 0.66 0.996786
Target:  5'- gGCGcGCCCAggccccagcgcgcgcAGGCGCGGUGCgagugCGCCu- -3'
miRNA:   3'- -CGCaUGGGU---------------UUUGCGUUAUG-----GCGGcu -5'
5311 3' -50.2 NC_001798.1 + 145513 0.66 0.996568
Target:  5'- cGCGcGCCCc---CGCccgGCCGCCGc -3'
miRNA:   3'- -CGCaUGGGuuuuGCGuuaUGGCGGCu -5'
5311 3' -50.2 NC_001798.1 + 145471 0.66 0.996568
Target:  5'- cGCGcGCCCc---CGCccgGCCGCCGc -3'
miRNA:   3'- -CGCaUGGGuuuuGCGuuaUGGCGGCu -5'
5311 3' -50.2 NC_001798.1 + 145429 0.66 0.996568
Target:  5'- cGCGcGCCCc---CGCccgGCCGCCGc -3'
miRNA:   3'- -CGCaUGGGuuuuGCGuuaUGGCGGCu -5'
5311 3' -50.2 NC_001798.1 + 75355 0.66 0.996568
Target:  5'- cCGUACCCG--GCGCAcccgggGCUGuuGGa -3'
miRNA:   3'- cGCAUGGGUuuUGCGUua----UGGCggCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.