miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5311 5' -62.8 NC_001798.1 + 9644 0.66 0.63135
Target:  5'- cCGCCccgaGGcGCaGCgGGCC-GCGCGCg -3'
miRNA:   3'- -GCGGuc--CCaUGaCGgCCGGuCGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 39374 0.66 0.63135
Target:  5'- aCGgCGGGGUcgauGgUGUCGGCagAGgGCGCc -3'
miRNA:   3'- -GCgGUCCCA----UgACGGCCGg-UCgCGCG- -5'
5311 5' -62.8 NC_001798.1 + 39417 0.66 0.63135
Target:  5'- gGaCCGGGGcGCgGCCGuCC-GCGUGCg -3'
miRNA:   3'- gC-GGUCCCaUGaCGGCcGGuCGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 80284 0.66 0.63135
Target:  5'- gCGCCGGGGcaaGCUGuCCGaaaccgacccGCUGGCGCccugGCg -3'
miRNA:   3'- -GCGGUCCCa--UGAC-GGC----------CGGUCGCG----CG- -5'
5311 5' -62.8 NC_001798.1 + 98770 0.66 0.63135
Target:  5'- aCGCCAacgcgaccGUcGCcGCCGGCCAcgccagcuGCGCGCg -3'
miRNA:   3'- -GCGGUcc------CA-UGaCGGCCGGU--------CGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 147154 0.66 0.63135
Target:  5'- gGCCGGGGgucccgGgUaGCCGcCCGGCGCcggGCg -3'
miRNA:   3'- gCGGUCCCa-----UgA-CGGCcGGUCGCG---CG- -5'
5311 5' -62.8 NC_001798.1 + 100175 0.66 0.63135
Target:  5'- cCGCCAccGU-CgGCCGGCgggugAGCGCGCg -3'
miRNA:   3'- -GCGGUccCAuGaCGGCCGg----UCGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 150565 0.66 0.63135
Target:  5'- gGCCcGGGgcCcGCgGGgCGGCGCGg -3'
miRNA:   3'- gCGGuCCCauGaCGgCCgGUCGCGCg -5'
5311 5' -62.8 NC_001798.1 + 72542 0.66 0.630371
Target:  5'- aGCCA--GUACUGCgGcauguaucacgacGCCaAGCGCGCg -3'
miRNA:   3'- gCGGUccCAUGACGgC-------------CGG-UCGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 118636 0.66 0.629392
Target:  5'- uGCgAGGGUcgaguggucuuuCUGCCGaccauccgccGCCAGCugGCGCu -3'
miRNA:   3'- gCGgUCCCAu-----------GACGGC----------CGGUCG--CGCG- -5'
5311 5' -62.8 NC_001798.1 + 100788 0.66 0.621563
Target:  5'- aGUgGGGGgcgGgUGUCGGCCgucucgGGCGUGUc -3'
miRNA:   3'- gCGgUCCCa--UgACGGCCGG------UCGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 95003 0.66 0.621563
Target:  5'- gGCCccgcAGGGcgGCgcggGCCuggaggccggGGCCcGCGCGCu -3'
miRNA:   3'- gCGG----UCCCa-UGa---CGG----------CCGGuCGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 143813 0.66 0.621563
Target:  5'- gGCCcGGGcgGC-GCgCGGCCAGC-CGUu -3'
miRNA:   3'- gCGGuCCCa-UGaCG-GCCGGUCGcGCG- -5'
5311 5' -62.8 NC_001798.1 + 147234 0.66 0.621563
Target:  5'- gCGCgGGGGccccgggGCcccggGCCGcGCCGGCgGCGUu -3'
miRNA:   3'- -GCGgUCCCa------UGa----CGGC-CGGUCG-CGCG- -5'
5311 5' -62.8 NC_001798.1 + 115505 0.66 0.608853
Target:  5'- gGCCgcgaauccguacgGGGcGUACgucgcggccccgGCCGGCCccGGCGCGg -3'
miRNA:   3'- gCGG-------------UCC-CAUGa-----------CGGCCGG--UCGCGCg -5'
5311 5' -62.8 NC_001798.1 + 117654 0.66 0.605923
Target:  5'- uCGCCggcccugcaacccgcGGGG-AC-GCgCGGCCGGCgGCGUg -3'
miRNA:   3'- -GCGG---------------UCCCaUGaCG-GCCGGUCG-CGCG- -5'
5311 5' -62.8 NC_001798.1 + 118735 0.66 0.602019
Target:  5'- aCGUUGGGGUugUuGCUGGCguaccgCAGCGCu- -3'
miRNA:   3'- -GCGGUCCCAugA-CGGCCG------GUCGCGcg -5'
5311 5' -62.8 NC_001798.1 + 53102 0.66 0.602019
Target:  5'- aCGCCGGGcGcGCgGCgcgagcucccugCGGCUGGCGCGg -3'
miRNA:   3'- -GCGGUCC-CaUGaCG------------GCCGGUCGCGCg -5'
5311 5' -62.8 NC_001798.1 + 23791 0.66 0.602019
Target:  5'- aCGUCAGcGGggagccgugGCccgggGCCGGCCccccgcccccggGGCGCGUg -3'
miRNA:   3'- -GCGGUC-CCa--------UGa----CGGCCGG------------UCGCGCG- -5'
5311 5' -62.8 NC_001798.1 + 57155 0.66 0.602019
Target:  5'- aGCCGcGGGcugGC-GCCcgGGCCGGCGCc- -3'
miRNA:   3'- gCGGU-CCCa--UGaCGG--CCGGUCGCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.