miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5312 3' -56 NC_001798.1 + 69921 0.66 0.930023
Target:  5'- aUGCCGGGAcauaacGCGccguauaacACGCCGCGcCUUCGc -3'
miRNA:   3'- cGCGGCCUU------CGU---------UGUGGUGCaGGAGC- -5'
5312 3' -56 NC_001798.1 + 24477 0.66 0.930023
Target:  5'- uCGCCGcccuGggGCGccugaGCGCCGCGcccgCCUCc -3'
miRNA:   3'- cGCGGC----CuuCGU-----UGUGGUGCa---GGAGc -5'
5312 3' -56 NC_001798.1 + 115579 0.66 0.930023
Target:  5'- aCGCCuGGcGGCAGCGCCuCGcCCaCGg -3'
miRNA:   3'- cGCGG-CCuUCGUUGUGGuGCaGGaGC- -5'
5312 3' -56 NC_001798.1 + 58826 0.66 0.930023
Target:  5'- uCGUCGGccagcaccAGCAGCGCCGCGUaggCGg -3'
miRNA:   3'- cGCGGCCu-------UCGUUGUGGUGCAggaGC- -5'
5312 3' -56 NC_001798.1 + 32243 0.66 0.92478
Target:  5'- gGgGCUgguGGGAGCGucGCGuCCGCGUCCggCGc -3'
miRNA:   3'- -CgCGG---CCUUCGU--UGU-GGUGCAGGa-GC- -5'
5312 3' -56 NC_001798.1 + 64938 0.66 0.92478
Target:  5'- -gGCCGcGAGCAGCAUCA---CCUCGg -3'
miRNA:   3'- cgCGGCcUUCGUUGUGGUgcaGGAGC- -5'
5312 3' -56 NC_001798.1 + 68517 0.66 0.92478
Target:  5'- uCGggGGAGGgGGCGUCAUGUCCUCGg -3'
miRNA:   3'- cGCggCCUUCgUUGUGGUGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 102510 0.66 0.92478
Target:  5'- gGCGCCGGGGuGUccguAgGCCAcCGUCCccgCGg -3'
miRNA:   3'- -CGCGGCCUU-CGu---UgUGGU-GCAGGa--GC- -5'
5312 3' -56 NC_001798.1 + 115013 0.66 0.92478
Target:  5'- gGCGCUGGugauGGGCAAgGCCguGCGgagCCUgGa -3'
miRNA:   3'- -CGCGGCC----UUCGUUgUGG--UGCa--GGAgC- -5'
5312 3' -56 NC_001798.1 + 135047 0.66 0.92478
Target:  5'- gGCcUCGGAGGCGGCcgGCCGCcUCCUg- -3'
miRNA:   3'- -CGcGGCCUUCGUUG--UGGUGcAGGAgc -5'
5312 3' -56 NC_001798.1 + 142132 0.66 0.92478
Target:  5'- cGCuGCCGGAcGCGGCACagguggugCACGUgUUUGa -3'
miRNA:   3'- -CG-CGGCCUuCGUUGUG--------GUGCAgGAGC- -5'
5312 3' -56 NC_001798.1 + 80368 0.66 0.924242
Target:  5'- gGCGCUcgGGAAGCucaguccggcccaGGC-CCuggcggcggugaGCGUCCUCGg -3'
miRNA:   3'- -CGCGG--CCUUCG-------------UUGuGG------------UGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 36478 0.66 0.919302
Target:  5'- aGCGCCgGGAGGgGGCGCCggcgcgacgcggGCGgCCgggCGg -3'
miRNA:   3'- -CGCGG-CCUUCgUUGUGG------------UGCaGGa--GC- -5'
5312 3' -56 NC_001798.1 + 59834 0.66 0.919302
Target:  5'- gGCGCCGc-GGUcGC-CCGCGUCCggcUCGg -3'
miRNA:   3'- -CGCGGCcuUCGuUGuGGUGCAGG---AGC- -5'
5312 3' -56 NC_001798.1 + 76546 0.66 0.919302
Target:  5'- aGCaGCUGGAcAGCGACgcgGCCuuCGUCC-CGg -3'
miRNA:   3'- -CG-CGGCCU-UCGUUG---UGGu-GCAGGaGC- -5'
5312 3' -56 NC_001798.1 + 137490 0.66 0.919302
Target:  5'- gGgGCCGG-GGCAGaGCCGCGUgCUg- -3'
miRNA:   3'- -CgCGGCCuUCGUUgUGGUGCAgGAgc -5'
5312 3' -56 NC_001798.1 + 107233 0.66 0.919302
Target:  5'- cGCGCCc--GGCAcgaACCugGUCCUgGg -3'
miRNA:   3'- -CGCGGccuUCGUug-UGGugCAGGAgC- -5'
5312 3' -56 NC_001798.1 + 4414 0.66 0.919302
Target:  5'- gGCGCCGGGggucgcGGCGACaggcugGCCAUgggGUCCg-- -3'
miRNA:   3'- -CGCGGCCU------UCGUUG------UGGUG---CAGGagc -5'
5312 3' -56 NC_001798.1 + 8734 0.66 0.919302
Target:  5'- uGCGCacgaGGAAGUcguuGGCgGCCuCGUCUUCGc -3'
miRNA:   3'- -CGCGg---CCUUCG----UUG-UGGuGCAGGAGC- -5'
5312 3' -56 NC_001798.1 + 146603 0.66 0.919302
Target:  5'- gGCGCC---AGCGGC-CCACG-CCUCc -3'
miRNA:   3'- -CGCGGccuUCGUUGuGGUGCaGGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.