miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5313 3' -55.3 NC_001798.1 + 117670 0.66 0.934726
Target:  5'- cCGCGGGGAC-GCGCGgCcGGCgGCGUg -3'
miRNA:   3'- -GUGCUCCUGcCGUGCaGuUUGgCGUA- -5'
5313 3' -55.3 NC_001798.1 + 136983 0.66 0.934726
Target:  5'- aACGAgGGGgGGCACGgcCAGGCUGUg- -3'
miRNA:   3'- gUGCU-CCUgCCGUGCa-GUUUGGCGua -5'
5313 3' -55.3 NC_001798.1 + 4442 0.66 0.934726
Target:  5'- cCAUGGGGuccgGGUACGccccgCGGACCGCGg -3'
miRNA:   3'- -GUGCUCCug--CCGUGCa----GUUUGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 22336 0.66 0.934726
Target:  5'- gACGcGGACGcGCggGCGUCGgggcggGGCCGCGc -3'
miRNA:   3'- gUGCuCCUGC-CG--UGCAGU------UUGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 28791 0.66 0.934726
Target:  5'- gGCGGcGGCGGCGCG-CGGguccuccgccGCCGCGg -3'
miRNA:   3'- gUGCUcCUGCCGUGCaGUU----------UGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 42756 0.66 0.934726
Target:  5'- gCACaGAcGGGCGGCGCGcgGGGCCGaCAg -3'
miRNA:   3'- -GUG-CU-CCUGCCGUGCagUUUGGC-GUa -5'
5313 3' -55.3 NC_001798.1 + 49372 0.66 0.934726
Target:  5'- cUACGAGGccAUGGCGCaGUUuuuCCGCGg -3'
miRNA:   3'- -GUGCUCC--UGCCGUG-CAGuuuGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 86741 0.66 0.934726
Target:  5'- cCGCGAGGcCGGCGCGcugcUCAGACg---- -3'
miRNA:   3'- -GUGCUCCuGCCGUGC----AGUUUGgcgua -5'
5313 3' -55.3 NC_001798.1 + 97569 0.66 0.934726
Target:  5'- aGCGAGGACGgggaGCGCGgcccCGAGCCaggggcGCAg -3'
miRNA:   3'- gUGCUCCUGC----CGUGCa---GUUUGG------CGUa -5'
5313 3' -55.3 NC_001798.1 + 85931 0.66 0.934726
Target:  5'- gCGCGGGGGCGgagacagcugcuGCACG-CGcGCCGCc- -3'
miRNA:   3'- -GUGCUCCUGC------------CGUGCaGUuUGGCGua -5'
5313 3' -55.3 NC_001798.1 + 124331 0.66 0.934226
Target:  5'- gGCcGGGACGGCgcggaaaGCGUCAu-CCGCc- -3'
miRNA:   3'- gUGcUCCUGCCG-------UGCAGUuuGGCGua -5'
5313 3' -55.3 NC_001798.1 + 20770 0.66 0.929611
Target:  5'- cCGCGGGGAgcgaCGGCGCcc---GCCGCGUa -3'
miRNA:   3'- -GUGCUCCU----GCCGUGcaguuUGGCGUA- -5'
5313 3' -55.3 NC_001798.1 + 43649 0.66 0.929611
Target:  5'- gGCGAGGGCuGCucCGUgCuGGCCGCGg -3'
miRNA:   3'- gUGCUCCUGcCGu-GCA-GuUUGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 30179 0.66 0.929611
Target:  5'- aCACGGGGgacACGGCGCGggggucCCGCc- -3'
miRNA:   3'- -GUGCUCC---UGCCGUGCaguuu-GGCGua -5'
5313 3' -55.3 NC_001798.1 + 2684 0.66 0.929611
Target:  5'- gGCGGGcGCGGCGagcgaGUCG-GCCGCGg -3'
miRNA:   3'- gUGCUCcUGCCGUg----CAGUuUGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 37175 0.66 0.924253
Target:  5'- gGCGGGccgcuCGGCGCGcCAGgcGCCGCGc -3'
miRNA:   3'- gUGCUCcu---GCCGUGCaGUU--UGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 53436 0.66 0.924253
Target:  5'- gGCGAGGugGaGC-UGUCGGGCgGCc- -3'
miRNA:   3'- gUGCUCCugC-CGuGCAGUUUGgCGua -5'
5313 3' -55.3 NC_001798.1 + 72809 0.66 0.920922
Target:  5'- gCGCGcuGGCGGCGCcucucggccggcuaUCAGGCCGCAc -3'
miRNA:   3'- -GUGCucCUGCCGUGc-------------AGUUUGGCGUa -5'
5313 3' -55.3 NC_001798.1 + 141581 0.66 0.918653
Target:  5'- uGCGGcGGCGGCACG-CGAcgGCCGgCGUg -3'
miRNA:   3'- gUGCUcCUGCCGUGCaGUU--UGGC-GUA- -5'
5313 3' -55.3 NC_001798.1 + 85088 0.66 0.91281
Target:  5'- gCugGaAGGAgGGCGCGuUCGAGcguCCGUAUg -3'
miRNA:   3'- -GugC-UCCUgCCGUGC-AGUUU---GGCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.