miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5314 5' -57.9 NC_001798.1 + 85685 0.66 0.834392
Target:  5'- uGcCCGGGCGccACGCCCAGaAGCa-- -3'
miRNA:   3'- gC-GGUCCGCcaUGCGGGUCcUUGaau -5'
5314 5' -57.9 NC_001798.1 + 62279 0.66 0.834392
Target:  5'- cCGCCGGGCGGccCGgC-GGGAGCg-- -3'
miRNA:   3'- -GCGGUCCGCCauGCgGgUCCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 153004 0.66 0.834392
Target:  5'- gCGCgGGGCGGU-CGCCgGGGc----- -3'
miRNA:   3'- -GCGgUCCGCCAuGCGGgUCCuugaau -5'
5314 5' -57.9 NC_001798.1 + 58866 0.66 0.834392
Target:  5'- gCGCCAGGCacugGGUcccGgGCCC-GGAACc-- -3'
miRNA:   3'- -GCGGUCCG----CCA---UgCGGGuCCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 54705 0.66 0.82606
Target:  5'- cCGCCGGggucuacgacGCGGUGCGgaCCUGGGGGCc-- -3'
miRNA:   3'- -GCGGUC----------CGCCAUGC--GGGUCCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 80353 0.66 0.82606
Target:  5'- gCGCCGGGaCGucccgGCGCUCGGGAAg--- -3'
miRNA:   3'- -GCGGUCC-GCca---UGCGGGUCCUUgaau -5'
5314 5' -57.9 NC_001798.1 + 3202 0.66 0.825217
Target:  5'- gGCCggcgcggAGGCGGgcgcgGCGCUCAGGcGCc-- -3'
miRNA:   3'- gCGG-------UCCGCCa----UGCGGGUCCuUGaau -5'
5314 5' -57.9 NC_001798.1 + 135710 0.66 0.817554
Target:  5'- cCGCgGGGcCGcGUACGCCCGGcGGCc-- -3'
miRNA:   3'- -GCGgUCC-GC-CAUGCGGGUCcUUGaau -5'
5314 5' -57.9 NC_001798.1 + 34794 0.66 0.817554
Target:  5'- cCGCCGGcGCGGcccgGgGCCCcGGGGCc-- -3'
miRNA:   3'- -GCGGUC-CGCCa---UgCGGGuCCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 71086 0.66 0.808881
Target:  5'- gCGUCAGcccGCGGUcggcgugcGCGCCCccGGGGACg-- -3'
miRNA:   3'- -GCGGUC---CGCCA--------UGCGGG--UCCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 1405 0.66 0.808881
Target:  5'- gGCCGcaGCGGcGCGCCCAGGccccAGCg-- -3'
miRNA:   3'- gCGGUc-CGCCaUGCGGGUCC----UUGaau -5'
5314 5' -57.9 NC_001798.1 + 27510 0.66 0.808881
Target:  5'- aGCCGcGCGGggGCGCCCgcGGGAAg--- -3'
miRNA:   3'- gCGGUcCGCCa-UGCGGG--UCCUUgaau -5'
5314 5' -57.9 NC_001798.1 + 86422 0.66 0.808881
Target:  5'- aGCUcgAGGCGG-ACcccgaggcgcaGCCCGGGGACg-- -3'
miRNA:   3'- gCGG--UCCGCCaUG-----------CGGGUCCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 147201 0.66 0.800049
Target:  5'- cCGCCcGGCGGUcCgGCCCGGGcccccGGCg-- -3'
miRNA:   3'- -GCGGuCCGCCAuG-CGGGUCC-----UUGaau -5'
5314 5' -57.9 NC_001798.1 + 47971 0.66 0.800049
Target:  5'- gCGgCAGGCGaccCGCCCAGGccGACUc- -3'
miRNA:   3'- -GCgGUCCGCcauGCGGGUCC--UUGAau -5'
5314 5' -57.9 NC_001798.1 + 19286 0.66 0.800049
Target:  5'- gGCguGGUGGUgcccgGCGaCCGGGAACg-- -3'
miRNA:   3'- gCGguCCGCCA-----UGCgGGUCCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 110864 0.66 0.799157
Target:  5'- aGCCAGGCaaacGGUaagcagcGCGUCCAGGuACc-- -3'
miRNA:   3'- gCGGUCCG----CCA-------UGCGGGUCCuUGaau -5'
5314 5' -57.9 NC_001798.1 + 111598 0.67 0.791067
Target:  5'- gGCCcGGCGGgGCGgccuccuggagcCCCGGGGGCg-- -3'
miRNA:   3'- gCGGuCCGCCaUGC------------GGGUCCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 77434 0.67 0.791067
Target:  5'- gCGCCGGGCc-UGCGCCCAgccggaggGGGACc-- -3'
miRNA:   3'- -GCGGUCCGccAUGCGGGU--------CCUUGaau -5'
5314 5' -57.9 NC_001798.1 + 102643 0.67 0.787434
Target:  5'- uCGCCGGGCGGcggaggggccgggGCGCCCGaugccgaaacGGggUUc- -3'
miRNA:   3'- -GCGGUCCGCCa------------UGCGGGU----------CCuuGAau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.