miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5315 5' -62.8 NC_001798.1 + 46973 0.66 0.667634
Target:  5'- gGCCGCuGGGuggugcuguuGuuCGUCGCGCUCgUCg -3'
miRNA:   3'- -CGGUGuCCC----------UggGCAGCGCGAGgGGg -5'
5315 5' -62.8 NC_001798.1 + 33245 0.66 0.667634
Target:  5'- aGCC---GGGGCCCGgccUCGUucugGCUCCCUg -3'
miRNA:   3'- -CGGuguCCCUGGGC---AGCG----CGAGGGGg -5'
5315 5' -62.8 NC_001798.1 + 25277 0.66 0.667634
Target:  5'- aGCCGCcGGGGCCCagccacaCGCcgGCgCCCUCg -3'
miRNA:   3'- -CGGUGuCCCUGGGca-----GCG--CGaGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 153830 0.66 0.667634
Target:  5'- cGCgGCGugcGGGGCCUccgGCGCcuUCCCCCc -3'
miRNA:   3'- -CGgUGU---CCCUGGGcagCGCG--AGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 51947 0.66 0.666673
Target:  5'- uGCCGCugcucagcgcgggAGGGGCC----GCGCcCCCCCa -3'
miRNA:   3'- -CGGUG-------------UCCCUGGgcagCGCGaGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 24915 0.66 0.666673
Target:  5'- uGCCGCGGa-GCCCG-CGCcugcugaGCUCCgCCg -3'
miRNA:   3'- -CGGUGUCccUGGGCaGCG-------CGAGGgGG- -5'
5315 5' -62.8 NC_001798.1 + 42500 0.66 0.666673
Target:  5'- --gGCGGGGACCgGUaggcacaCGCGCagCCCg -3'
miRNA:   3'- cggUGUCCCUGGgCA-------GCGCGagGGGg -5'
5315 5' -62.8 NC_001798.1 + 85842 0.66 0.658012
Target:  5'- --gGCGGGGGCUCGggaaCGCaaccCUCCCUCa -3'
miRNA:   3'- cggUGUCCCUGGGCa---GCGc---GAGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 29017 0.66 0.658012
Target:  5'- cGCCGCGcGGGCCCGgacucCGCcccgGCgaccgCCCCg -3'
miRNA:   3'- -CGGUGUcCCUGGGCa----GCG----CGa----GGGGg -5'
5315 5' -62.8 NC_001798.1 + 83856 0.66 0.658012
Target:  5'- gGCgGCgcuGGcGGGCCCGagGCGgCgaCCCCCg -3'
miRNA:   3'- -CGgUG---UC-CCUGGGCagCGC-Ga-GGGGG- -5'
5315 5' -62.8 NC_001798.1 + 85579 0.66 0.658012
Target:  5'- aCCAagaAGGcGACCCuuGUCG-GCUCCUUCg -3'
miRNA:   3'- cGGUg--UCC-CUGGG--CAGCgCGAGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 128027 0.66 0.655122
Target:  5'- cGCCGgGGGGcgcacacgccaucgACCCGgacUGCaGCcccggUCCCCCg -3'
miRNA:   3'- -CGGUgUCCC--------------UGGGCa--GCG-CG-----AGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 154107 0.66 0.648372
Target:  5'- gGCCGgcgcCGGGGAcCCCGgcggCGgGgaCCCCg -3'
miRNA:   3'- -CGGU----GUCCCU-GGGCa---GCgCgaGGGGg -5'
5315 5' -62.8 NC_001798.1 + 74734 0.66 0.648372
Target:  5'- aGCCcuggaGGGGACCCcgccCGCGaagCCCUCg -3'
miRNA:   3'- -CGGug---UCCCUGGGca--GCGCga-GGGGG- -5'
5315 5' -62.8 NC_001798.1 + 110045 0.66 0.648372
Target:  5'- gGCCACccaccaguguAGcGGCCCGUCGCacaacGCggagCCCCg -3'
miRNA:   3'- -CGGUG----------UCcCUGGGCAGCG-----CGa---GGGGg -5'
5315 5' -62.8 NC_001798.1 + 32513 0.66 0.648372
Target:  5'- gGCCACAuaGGGGCCUa-CGUGgUCCUCg -3'
miRNA:   3'- -CGGUGU--CCCUGGGcaGCGCgAGGGGg -5'
5315 5' -62.8 NC_001798.1 + 73314 0.66 0.647407
Target:  5'- cCCACAGGacacgcaGGCCCG-CGCGCcgucgacgCgCCCg -3'
miRNA:   3'- cGGUGUCC-------CUGGGCaGCGCGa-------GgGGG- -5'
5315 5' -62.8 NC_001798.1 + 91264 0.66 0.63872
Target:  5'- uGCCggcggcaagGCGGcGGugCCGUCuggGUgGCUCCCCg -3'
miRNA:   3'- -CGG---------UGUC-CCugGGCAG---CG-CGAGGGGg -5'
5315 5' -62.8 NC_001798.1 + 499 0.66 0.63872
Target:  5'- cGCCcCGGGGGCUUccccCGCccCUCCCCCc -3'
miRNA:   3'- -CGGuGUCCCUGGGca--GCGc-GAGGGGG- -5'
5315 5' -62.8 NC_001798.1 + 71082 0.66 0.63872
Target:  5'- aGCCGCGucaGCCCGcggucggCGUGCgcgCCCCCg -3'
miRNA:   3'- -CGGUGUcccUGGGCa------GCGCGa--GGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.