miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5316 3' -57.6 NC_001798.1 + 106962 0.65 0.87004
Target:  5'- --uGGaCCGCGGCGAGAUAucggccggggaggcGGCGGUGg -3'
miRNA:   3'- ccuCCcGGUGCUGCUCUGU--------------CCGCUAU- -5'
5316 3' -57.6 NC_001798.1 + 105609 0.66 0.86489
Target:  5'- cGAGGGC---GGCG-GGCGGGCGAc- -3'
miRNA:   3'- cCUCCCGgugCUGCuCUGUCCGCUau -5'
5316 3' -57.6 NC_001798.1 + 27771 0.66 0.86489
Target:  5'- --cGGGCUGCGcacgccagcCGGGACGGGUGAg- -3'
miRNA:   3'- ccuCCCGGUGCu--------GCUCUGUCCGCUau -5'
5316 3' -57.6 NC_001798.1 + 52168 0.66 0.860397
Target:  5'- cGGGaGGCCGCGuuuGCGGGGCGcguccuggacgugcuGGCGGUc -3'
miRNA:   3'- cCUC-CCGGUGC---UGCUCUGU---------------CCGCUAu -5'
5316 3' -57.6 NC_001798.1 + 6262 0.66 0.857362
Target:  5'- gGGAcGGGCCGgggggacgggcCGGgGGGACGGGcCGGg- -3'
miRNA:   3'- -CCU-CCCGGU-----------GCUgCUCUGUCC-GCUau -5'
5316 3' -57.6 NC_001798.1 + 6301 0.66 0.857362
Target:  5'- gGGAcGGGCCGgggggacgggcCGGgGGGACGGGcCGGg- -3'
miRNA:   3'- -CCU-CCCGGU-----------GCUgCUCUGUCC-GCUau -5'
5316 3' -57.6 NC_001798.1 + 6340 0.66 0.857362
Target:  5'- gGGAcGGGCCGgggggacgggcCGGgGGGACGGGcCGGg- -3'
miRNA:   3'- -CCU-CCCGGU-----------GCUgCUCUGUCC-GCUau -5'
5316 3' -57.6 NC_001798.1 + 27330 0.66 0.857362
Target:  5'- aGGGGGUgGCGGgGAaccgugugcgGGCGGGCGGg- -3'
miRNA:   3'- cCUCCCGgUGCUgCU----------CUGUCCGCUau -5'
5316 3' -57.6 NC_001798.1 + 111646 0.66 0.857362
Target:  5'- cGGGGGCgCuCGGCGGGG-GGGCGGa- -3'
miRNA:   3'- cCUCCCG-GuGCUGCUCUgUCCGCUau -5'
5316 3' -57.6 NC_001798.1 + 137671 0.66 0.857362
Target:  5'- -cGGGGCCACGA--AGG-AGGCGAUc -3'
miRNA:   3'- ccUCCCGGUGCUgcUCUgUCCGCUAu -5'
5316 3' -57.6 NC_001798.1 + 144413 0.66 0.857362
Target:  5'- -uAGGGCgACGACGcuGGACAGcCGAc- -3'
miRNA:   3'- ccUCCCGgUGCUGC--UCUGUCcGCUau -5'
5316 3' -57.6 NC_001798.1 + 74660 0.66 0.852749
Target:  5'- cGGGGGGCCu---CGGGcccacccgacacaccGCAGGCGGg- -3'
miRNA:   3'- -CCUCCCGGugcuGCUC---------------UGUCCGCUau -5'
5316 3' -57.6 NC_001798.1 + 32817 0.66 0.849634
Target:  5'- --cGGGCCACGGgGAG-UAGGgGGa- -3'
miRNA:   3'- ccuCCCGGUGCUgCUCuGUCCgCUau -5'
5316 3' -57.6 NC_001798.1 + 153073 0.66 0.849634
Target:  5'- gGGGcGGGCggaGCGGCGGGGC-GGCGc-- -3'
miRNA:   3'- -CCU-CCCGg--UGCUGCUCUGuCCGCuau -5'
5316 3' -57.6 NC_001798.1 + 4088 0.66 0.849634
Target:  5'- cGGGGGuCCGgGcCGGGGCGGGCu--- -3'
miRNA:   3'- cCUCCC-GGUgCuGCUCUGUCCGcuau -5'
5316 3' -57.6 NC_001798.1 + 120369 0.66 0.849634
Target:  5'- --uGGGCgaggcugugCACGACGcaGCGGGCGAUGu -3'
miRNA:   3'- ccuCCCG---------GUGCUGCucUGUCCGCUAU- -5'
5316 3' -57.6 NC_001798.1 + 153692 0.66 0.849634
Target:  5'- cGGGGGCCGCcgccGGCGcAGGCucAGGCGc-- -3'
miRNA:   3'- cCUCCCGGUG----CUGC-UCUG--UCCGCuau -5'
5316 3' -57.6 NC_001798.1 + 31390 0.66 0.849634
Target:  5'- cGGAGGGCaggACGccccccGCGAGACAGccccgcGCGGc- -3'
miRNA:   3'- -CCUCCCGg--UGC------UGCUCUGUC------CGCUau -5'
5316 3' -57.6 NC_001798.1 + 30039 0.66 0.841715
Target:  5'- gGGAGGaGCCcgagaGCGG-GGGACAGGgGGg- -3'
miRNA:   3'- -CCUCC-CGG-----UGCUgCUCUGUCCgCUau -5'
5316 3' -57.6 NC_001798.1 + 29496 0.66 0.841715
Target:  5'- gGGAcgGGGCCGCccCGAGAgGGGgGGa- -3'
miRNA:   3'- -CCU--CCCGGUGcuGCUCUgUCCgCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.