miRNA display CGI


Results 1 - 20 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5316 5' -64.1 NC_001798.1 + 132305 0.66 0.604849
Target:  5'- aCGgACCGCGUGCuGCUGCuccacucgcucacccCGccCGGCGa -3'
miRNA:   3'- -GCgUGGCGCACG-CGGCG---------------GCa-GCCGCg -5'
5316 5' -64.1 NC_001798.1 + 58844 0.66 0.601026
Target:  5'- aGCGCCGCGUagGCgGCCc-CGaGCGCc -3'
miRNA:   3'- gCGUGGCGCAcgCGgCGGcaGC-CGCG- -5'
5316 5' -64.1 NC_001798.1 + 28077 0.66 0.601026
Target:  5'- gCGCcgGCCGCGUccuCGCUcCUG-CGGCGCu -3'
miRNA:   3'- -GCG--UGGCGCAc--GCGGcGGCaGCCGCG- -5'
5316 5' -64.1 NC_001798.1 + 9772 0.66 0.601026
Target:  5'- uGCGCCGCG-GUGCUGaUgGUCauguggccccaGGCGUg -3'
miRNA:   3'- gCGUGGCGCaCGCGGC-GgCAG-----------CCGCG- -5'
5316 5' -64.1 NC_001798.1 + 115876 0.66 0.601026
Target:  5'- gGCGCCgGCuaccauaGCCGCCGUCcgcggGGCGUu -3'
miRNA:   3'- gCGUGG-CGcacg---CGGCGGCAG-----CCGCG- -5'
5316 5' -64.1 NC_001798.1 + 83530 0.66 0.601026
Target:  5'- aGC-CCGCGcaugccgaGCGCCcggacGuuGUCGGCGg -3'
miRNA:   3'- gCGuGGCGCa-------CGCGG-----CggCAGCCGCg -5'
5316 5' -64.1 NC_001798.1 + 80686 0.66 0.599116
Target:  5'- --gGCCGCGgugcuccucggcGCGcCCGUCGUggUGGCGCu -3'
miRNA:   3'- gcgUGGCGCa-----------CGC-GGCGGCA--GCCGCG- -5'
5316 5' -64.1 NC_001798.1 + 100389 0.66 0.598161
Target:  5'- gCGCcucacCCGCGacGCGCUcgaGCCGUgcaccgugggccacCGGCGCu -3'
miRNA:   3'- -GCGu----GGCGCa-CGCGG---CGGCA--------------GCCGCG- -5'
5316 5' -64.1 NC_001798.1 + 70822 0.66 0.591484
Target:  5'- aGCaAUUGgGUGaCGCUGUUcUCGGCGCa -3'
miRNA:   3'- gCG-UGGCgCAC-GCGGCGGcAGCCGCG- -5'
5316 5' -64.1 NC_001798.1 + 72668 0.66 0.591484
Target:  5'- uCGCACgaggguaaCGUGCugGCCGUCGUgCGGCGg -3'
miRNA:   3'- -GCGUGgc------GCACG--CGGCGGCA-GCCGCg -5'
5316 5' -64.1 NC_001798.1 + 104091 0.66 0.591484
Target:  5'- gGCGCa-CGaGCGCCGCCuggCgGGCGCc -3'
miRNA:   3'- gCGUGgcGCaCGCGGCGGca-G-CCGCG- -5'
5316 5' -64.1 NC_001798.1 + 131001 0.66 0.591484
Target:  5'- gGCAUCGCcauacGgGCCGCCGcCaGGCGa -3'
miRNA:   3'- gCGUGGCGca---CgCGGCGGCaG-CCGCg -5'
5316 5' -64.1 NC_001798.1 + 24816 0.66 0.591484
Target:  5'- uGCGCCuGCGcggggaccUGCGCgugGCCGgCGGCaGCg -3'
miRNA:   3'- gCGUGG-CGC--------ACGCGg--CGGCaGCCG-CG- -5'
5316 5' -64.1 NC_001798.1 + 69068 0.66 0.591484
Target:  5'- gGC-CCGCGcGCGCgcaGCCGcucUCGGCccGCc -3'
miRNA:   3'- gCGuGGCGCaCGCGg--CGGC---AGCCG--CG- -5'
5316 5' -64.1 NC_001798.1 + 85720 0.66 0.591484
Target:  5'- aCGCccuCCcCGgGCGCCGCCaa-GGUGCa -3'
miRNA:   3'- -GCGu--GGcGCaCGCGGCGGcagCCGCG- -5'
5316 5' -64.1 NC_001798.1 + 91570 0.66 0.591484
Target:  5'- gGUGuCCGCGgggGCGCCGCgGuuucuuuuuaUCGGCccgGCa -3'
miRNA:   3'- gCGU-GGCGCa--CGCGGCGgC----------AGCCG---CG- -5'
5316 5' -64.1 NC_001798.1 + 108678 0.66 0.591484
Target:  5'- aCGCGCCGCccccgGgGCCGCCcG-CGGgGa -3'
miRNA:   3'- -GCGUGGCGca---CgCGGCGG-CaGCCgCg -5'
5316 5' -64.1 NC_001798.1 + 121495 0.66 0.591484
Target:  5'- uGCcggUCGCGUGCGaCGCCcaaGGCGUg -3'
miRNA:   3'- gCGu--GGCGCACGCgGCGGcagCCGCG- -5'
5316 5' -64.1 NC_001798.1 + 134688 0.66 0.591484
Target:  5'- gGCGCgG-GUGCuGCUGCCGcgCGGCu- -3'
miRNA:   3'- gCGUGgCgCACG-CGGCGGCa-GCCGcg -5'
5316 5' -64.1 NC_001798.1 + 57738 0.66 0.591484
Target:  5'- aGgACCG-GUGgGCgCGCC--CGGCGCa -3'
miRNA:   3'- gCgUGGCgCACgCG-GCGGcaGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.