miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5317 5' -51.1 NC_001798.1 + 27716 0.66 0.995422
Target:  5'- cGGGGCGGGAGuccccGUCcugccgccgCCCCu -3'
miRNA:   3'- -CCCCGCUCUC-----CAGuuaucuaaaGGGG- -5'
5317 5' -51.1 NC_001798.1 + 36097 0.66 0.995207
Target:  5'- uGGGCGGGuGGUgGggGGGgg-CCCg -3'
miRNA:   3'- cCCCGCUCuCCAgUuaUCUaaaGGGg -5'
5317 5' -51.1 NC_001798.1 + 29851 0.66 0.995207
Target:  5'- aGGGCGAcccccGGGUCuc-AGGcccccccuUUUCCCCg -3'
miRNA:   3'- cCCCGCUc----UCCAGuuaUCU--------AAAGGGG- -5'
5317 5' -51.1 NC_001798.1 + 15908 0.66 0.994985
Target:  5'- cGGGGUGGGaAGGgggcguacggaccgUCAucUAGGg--CCCCg -3'
miRNA:   3'- -CCCCGCUC-UCC--------------AGUu-AUCUaaaGGGG- -5'
5317 5' -51.1 NC_001798.1 + 125666 0.66 0.994909
Target:  5'- gGGGGCGGcuGAGGUCAGggGGGUcggggcgaaggagUCCg- -3'
miRNA:   3'- -CCCCGCU--CUCCAGUUa-UCUAa------------AGGgg -5'
5317 5' -51.1 NC_001798.1 + 91807 0.66 0.994432
Target:  5'- cGGGGCGuGGGGaCcGUGGGcggggCCCg -3'
miRNA:   3'- -CCCCGCuCUCCaGuUAUCUaaa--GGGg -5'
5317 5' -51.1 NC_001798.1 + 148303 0.66 0.994432
Target:  5'- cGGGCGGGgugGGGUgAGUGcGGUUgcaugCCUCg -3'
miRNA:   3'- cCCCGCUC---UCCAgUUAU-CUAAa----GGGG- -5'
5317 5' -51.1 NC_001798.1 + 20515 0.66 0.99435
Target:  5'- cGGGGCcuGGGGUUgcgccgcgcgGAUAGGUcugucgcUUCUCCa -3'
miRNA:   3'- -CCCCGcuCUCCAG----------UUAUCUA-------AAGGGG- -5'
5317 5' -51.1 NC_001798.1 + 41441 0.66 0.993559
Target:  5'- cGGGcGUGGGGGGUCcAUG-----CCCCg -3'
miRNA:   3'- -CCC-CGCUCUCCAGuUAUcuaaaGGGG- -5'
5317 5' -51.1 NC_001798.1 + 35853 0.66 0.993559
Target:  5'- -aGGCGAGGGGaugCAGgaggaGGAUcgggacUCCCCa -3'
miRNA:   3'- ccCCGCUCUCCa--GUUa----UCUAa-----AGGGG- -5'
5317 5' -51.1 NC_001798.1 + 43674 0.66 0.99258
Target:  5'- cGGGGCu-GGGGUCG-UGGGUggucacggCCCg -3'
miRNA:   3'- -CCCCGcuCUCCAGUuAUCUAaa------GGGg -5'
5317 5' -51.1 NC_001798.1 + 91080 0.66 0.99258
Target:  5'- aGGGGCGcgccGGAGG-CGgccgucGUGGA---CCCCg -3'
miRNA:   3'- -CCCCGC----UCUCCaGU------UAUCUaaaGGGG- -5'
5317 5' -51.1 NC_001798.1 + 102239 0.66 0.99258
Target:  5'- cGGGGCGGGccucgcccGGGUaaUAcgGGAagUCCCg -3'
miRNA:   3'- -CCCCGCUC--------UCCA--GUuaUCUaaAGGGg -5'
5317 5' -51.1 NC_001798.1 + 27027 0.66 0.991485
Target:  5'- cGGGCG-GGGGUCGGgcGGgcggcacgUCuCCCg -3'
miRNA:   3'- cCCCGCuCUCCAGUUauCUaa------AG-GGG- -5'
5317 5' -51.1 NC_001798.1 + 46000 0.66 0.991485
Target:  5'- gGGGGauccagGGGAGGgc-GUGGG--UCCCCg -3'
miRNA:   3'- -CCCCg-----CUCUCCaguUAUCUaaAGGGG- -5'
5317 5' -51.1 NC_001798.1 + 152093 0.67 0.990646
Target:  5'- cGGGCcGGGGGUCGGccccgucaagcgUCCCCg -3'
miRNA:   3'- cCCCGcUCUCCAGUUaucuaa------AGGGG- -5'
5317 5' -51.1 NC_001798.1 + 74516 0.67 0.990267
Target:  5'- cGGGGCGAGAucggggGGcUCGgggcgcucuuuGUcGGUguggUCCCCa -3'
miRNA:   3'- -CCCCGCUCU------CC-AGU-----------UAuCUAa---AGGGG- -5'
5317 5' -51.1 NC_001798.1 + 34970 0.67 0.990267
Target:  5'- gGGGGCGGccgccGAGGUgcg-GGGg--CCCCu -3'
miRNA:   3'- -CCCCGCU-----CUCCAguuaUCUaaaGGGG- -5'
5317 5' -51.1 NC_001798.1 + 21815 0.67 0.988916
Target:  5'- cGGGGCG-GAGccCGcgGGAUgacgcgggCCCCg -3'
miRNA:   3'- -CCCCGCuCUCcaGUuaUCUAaa------GGGG- -5'
5317 5' -51.1 NC_001798.1 + 150003 0.67 0.987423
Target:  5'- cGGGGCGAGcGGcCcGUGGccgcggUCgCCCg -3'
miRNA:   3'- -CCCCGCUCuCCaGuUAUCuaa---AG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.