miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5318 3' -51.6 NC_001798.1 + 42466 0.66 0.988185
Target:  5'- cACGCAUCGUCAgggagccGUGCACaacguacggggcgggGACCgguagGCa -3'
miRNA:   3'- uUGUGUAGCGGUa------UACGUG---------------CUGGa----CG- -5'
5318 3' -51.6 NC_001798.1 + 111156 0.66 0.987564
Target:  5'- cGCGCGUCGCUccccaccgGCACGuCCUuggGCg -3'
miRNA:   3'- uUGUGUAGCGGuaua----CGUGCuGGA---CG- -5'
5318 3' -51.6 NC_001798.1 + 124339 0.66 0.987564
Target:  5'- cGGCGCGgaaagCGUCAUccGCcCGACCaGCg -3'
miRNA:   3'- -UUGUGUa----GCGGUAuaCGuGCUGGaCG- -5'
5318 3' -51.6 NC_001798.1 + 31750 0.66 0.987564
Target:  5'- aAGCACAgagucuggGCCGggcagGCGCGACCgacGCg -3'
miRNA:   3'- -UUGUGUag------CGGUaua--CGUGCUGGa--CG- -5'
5318 3' -51.6 NC_001798.1 + 62900 0.66 0.986076
Target:  5'- aAACGCG-CGCCcccauccccucccgAUGCcCGACCUGUu -3'
miRNA:   3'- -UUGUGUaGCGGua------------UACGuGCUGGACG- -5'
5318 3' -51.6 NC_001798.1 + 87467 0.66 0.985902
Target:  5'- cGGCACGUCGgcCCAccUGCACuACCgGCu -3'
miRNA:   3'- -UUGUGUAGC--GGUauACGUGcUGGaCG- -5'
5318 3' -51.6 NC_001798.1 + 24592 0.66 0.985902
Target:  5'- -cCGCGUgGCCGUggaGUGCcugGCcGCCUGCc -3'
miRNA:   3'- uuGUGUAgCGGUA---UACG---UGcUGGACG- -5'
5318 3' -51.6 NC_001798.1 + 99522 0.66 0.985902
Target:  5'- -cCACGUCGCCG-----ACGACCcGCa -3'
miRNA:   3'- uuGUGUAGCGGUauacgUGCUGGaCG- -5'
5318 3' -51.6 NC_001798.1 + 109305 0.66 0.985902
Target:  5'- cGACGCGauUCGCCucu--C-CGACCUGCu -3'
miRNA:   3'- -UUGUGU--AGCGGuauacGuGCUGGACG- -5'
5318 3' -51.6 NC_001798.1 + 108734 0.66 0.984075
Target:  5'- --aGCAUCGCgCAUcUGCACaacgcauccguGACCUGg -3'
miRNA:   3'- uugUGUAGCG-GUAuACGUG-----------CUGGACg -5'
5318 3' -51.6 NC_001798.1 + 62448 0.66 0.984075
Target:  5'- --gACGUCGCCGgugggccGCGCGACg-GCg -3'
miRNA:   3'- uugUGUAGCGGUaua----CGUGCUGgaCG- -5'
5318 3' -51.6 NC_001798.1 + 97470 0.66 0.984075
Target:  5'- cGGCugGggGCCGgcgGCGCGACCggggggGCc -3'
miRNA:   3'- -UUGugUagCGGUauaCGUGCUGGa-----CG- -5'
5318 3' -51.6 NC_001798.1 + 125531 0.66 0.984075
Target:  5'- cAGCGCAUCGCCGccgaGCGucaGGCCcGCc -3'
miRNA:   3'- -UUGUGUAGCGGUaua-CGUg--CUGGaCG- -5'
5318 3' -51.6 NC_001798.1 + 70595 0.66 0.983689
Target:  5'- uGCGCGUcCGCCAgUGUGCcguggaguggauCGACCgcugGCg -3'
miRNA:   3'- uUGUGUA-GCGGU-AUACGu-----------GCUGGa---CG- -5'
5318 3' -51.6 NC_001798.1 + 44178 0.66 0.982074
Target:  5'- cAGCACGcgCGCCucgugGUGCACGAaCaGCg -3'
miRNA:   3'- -UUGUGUa-GCGGua---UACGUGCUgGaCG- -5'
5318 3' -51.6 NC_001798.1 + 100846 0.66 0.982074
Target:  5'- gGGCGC-UUGCCGUGgggcUGCugGuCCUGg -3'
miRNA:   3'- -UUGUGuAGCGGUAU----ACGugCuGGACg -5'
5318 3' -51.6 NC_001798.1 + 138813 0.66 0.982074
Target:  5'- --uGCGUCGCCucccccucGCGCGuCUUGCg -3'
miRNA:   3'- uugUGUAGCGGuaua----CGUGCuGGACG- -5'
5318 3' -51.6 NC_001798.1 + 79667 0.66 0.982074
Target:  5'- cGGCGCGcUGCUG-AUGCgucccgagGCGGCCUGCg -3'
miRNA:   3'- -UUGUGUaGCGGUaUACG--------UGCUGGACG- -5'
5318 3' -51.6 NC_001798.1 + 107712 0.66 0.982074
Target:  5'- ---cCAUCGCCGagAUaCGCGACCUGg -3'
miRNA:   3'- uuguGUAGCGGUa-UAcGUGCUGGACg -5'
5318 3' -51.6 NC_001798.1 + 79358 0.66 0.97989
Target:  5'- uAGCGCGUaCGCCAgg-GCcgGCGGCCagacggGCg -3'
miRNA:   3'- -UUGUGUA-GCGGUauaCG--UGCUGGa-----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.