miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5319 5' -53 NC_001798.1 + 66749 0.66 0.977151
Target:  5'- ------cGGCGCCaCGUCCGccugggguGCGGCGg -3'
miRNA:   3'- gaauuuuCCGUGGgGUAGGC--------UGCCGU- -5'
5319 5' -53 NC_001798.1 + 51219 0.66 0.977151
Target:  5'- -------cGCGCCCCAggUCCGuuACGGCc -3'
miRNA:   3'- gaauuuucCGUGGGGU--AGGC--UGCCGu -5'
5319 5' -53 NC_001798.1 + 34989 0.66 0.977151
Target:  5'- -----cGGGgGCCCC-UCCGGCcggGGCGc -3'
miRNA:   3'- gaauuuUCCgUGGGGuAGGCUG---CCGU- -5'
5319 5' -53 NC_001798.1 + 26400 0.66 0.977151
Target:  5'- -----cGGGCGCUgCucgagcCCGACGGCGa -3'
miRNA:   3'- gaauuuUCCGUGGgGua----GGCUGCCGU- -5'
5319 5' -53 NC_001798.1 + 108108 0.66 0.974593
Target:  5'- -----uGGGC-CCCgGUCUGugGGUg -3'
miRNA:   3'- gaauuuUCCGuGGGgUAGGCugCCGu -5'
5319 5' -53 NC_001798.1 + 57462 0.66 0.974593
Target:  5'- uCUUGGGGGGCGgggCCgGUuuGGCGGUg -3'
miRNA:   3'- -GAAUUUUCCGUg--GGgUAggCUGCCGu -5'
5319 5' -53 NC_001798.1 + 106105 0.66 0.974326
Target:  5'- ------cGGCGCCgcgaCCGccgggucugcgguUCCGGCGGCAc -3'
miRNA:   3'- gaauuuuCCGUGG----GGU-------------AGGCUGCCGU- -5'
5319 5' -53 NC_001798.1 + 3898 0.66 0.971833
Target:  5'- --cGGGGGGCcgGCCCCGggCC-ACGGCu -3'
miRNA:   3'- gaaUUUUCCG--UGGGGUa-GGcUGCCGu -5'
5319 5' -53 NC_001798.1 + 4366 0.66 0.971833
Target:  5'- --cGGGGGGCGCgCCGg-CGGCGGUg -3'
miRNA:   3'- gaaUUUUCCGUGgGGUagGCUGCCGu -5'
5319 5' -53 NC_001798.1 + 7199 0.66 0.971833
Target:  5'- ------cGGCgACCaUgAUCCGGCGGCGg -3'
miRNA:   3'- gaauuuuCCG-UGG-GgUAGGCUGCCGU- -5'
5319 5' -53 NC_001798.1 + 31244 0.66 0.971833
Target:  5'- ------cGGCGCCCCGUugCgGGCGGgGg -3'
miRNA:   3'- gaauuuuCCGUGGGGUA--GgCUGCCgU- -5'
5319 5' -53 NC_001798.1 + 124133 0.66 0.968863
Target:  5'- -----uGGcGCGCCCCcgCCG-UGGCGg -3'
miRNA:   3'- gaauuuUC-CGUGGGGuaGGCuGCCGU- -5'
5319 5' -53 NC_001798.1 + 21644 0.66 0.968863
Target:  5'- ------cGGUGCCCCGcucgCCGcCGGCGu -3'
miRNA:   3'- gaauuuuCCGUGGGGUa---GGCuGCCGU- -5'
5319 5' -53 NC_001798.1 + 151482 0.66 0.968863
Target:  5'- ----cGGGGCgAUCUCGUCCGugcacACGGCAc -3'
miRNA:   3'- gaauuUUCCG-UGGGGUAGGC-----UGCCGU- -5'
5319 5' -53 NC_001798.1 + 149160 0.66 0.968863
Target:  5'- ----cGAGGCGCCUCggCCGGUGGUc -3'
miRNA:   3'- gaauuUUCCGUGGGGuaGGCUGCCGu -5'
5319 5' -53 NC_001798.1 + 31134 0.66 0.968863
Target:  5'- ---cGAAGaGCGCCCCggCgCGGgGGCGg -3'
miRNA:   3'- gaauUUUC-CGUGGGGuaG-GCUgCCGU- -5'
5319 5' -53 NC_001798.1 + 76931 0.66 0.968554
Target:  5'- ----cGGGGCcCCCCcccggaaGUCaCGGCGGCGc -3'
miRNA:   3'- gaauuUUCCGuGGGG-------UAG-GCUGCCGU- -5'
5319 5' -53 NC_001798.1 + 103141 0.66 0.965677
Target:  5'- ----cAAGGCGCCgC--CCGAUGGCGc -3'
miRNA:   3'- gaauuUUCCGUGGgGuaGGCUGCCGU- -5'
5319 5' -53 NC_001798.1 + 87909 0.66 0.965677
Target:  5'- gUUGAgcGGaaCGCCCCGggCGAUGGCGu -3'
miRNA:   3'- gAAUUuuCC--GUGGGGUagGCUGCCGU- -5'
5319 5' -53 NC_001798.1 + 28860 0.66 0.965677
Target:  5'- ---cGAGGGCgGCCUCggCCGGCGGa- -3'
miRNA:   3'- gaauUUUCCG-UGGGGuaGGCUGCCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.