miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5325 3' -56.1 NC_001798.1 + 124719 0.8 0.194827
Target:  5'- cGAGGGAGGcAGGGAGGAgCCCGAGaGCGg -3'
miRNA:   3'- -CUCCCUCU-UCUCUUCU-GGGCUC-CGUa -5'
5325 3' -56.1 NC_001798.1 + 124692 0.67 0.824583
Target:  5'- nGGGGGAcaGggGGGGAGACgaGGGGUc- -3'
miRNA:   3'- -CUCCCU--CuuCUCUUCUGggCUCCGua -5'
5325 3' -56.1 NC_001798.1 + 122950 0.77 0.309252
Target:  5'- gGAGGGccgggcgcGGAGGGAGGACCCGGGGUc- -3'
miRNA:   3'- -CUCCCu-------CUUCUCUUCUGGGCUCCGua -5'
5325 3' -56.1 NC_001798.1 + 121588 0.67 0.833088
Target:  5'- uGGGGGGGAAGGGAGGAggaggagggGGGGCGg -3'
miRNA:   3'- -CUCCCUCUUCUCUUCUggg------CUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 121325 0.66 0.893814
Target:  5'- gGAGGGAGGAGGGggGgggucagccgcACCaccGGCGc -3'
miRNA:   3'- -CUCCCUCUUCUCuuC-----------UGGgcuCCGUa -5'
5325 3' -56.1 NC_001798.1 + 121172 1.06 0.003969
Target:  5'- gGAGGGAGAAGAGAAGACCCGAGGCAUg -3'
miRNA:   3'- -CUCCCUCUUCUCUUCUGGGCUCCGUA- -5'
5325 3' -56.1 NC_001798.1 + 121043 0.89 0.056065
Target:  5'- gGAGGaGcaGGAAGAGGAGACCCGAGGCAUg -3'
miRNA:   3'- -CUCC-C--UCUUCUCUUCUGGGCUCCGUA- -5'
5325 3' -56.1 NC_001798.1 + 120114 0.66 0.886993
Target:  5'- cGGGGGGGggGGGggGAaaUgUGAGGa-- -3'
miRNA:   3'- -CUCCCUCuuCUCuuCU--GgGCUCCgua -5'
5325 3' -56.1 NC_001798.1 + 120031 0.69 0.720126
Target:  5'- cGA-GGAGAAGGGAaggggcgagggucGGGCCCGGGaGCGg -3'
miRNA:   3'- -CUcCCUCUUCUCU-------------UCUGGGCUC-CGUa -5'
5325 3' -56.1 NC_001798.1 + 119982 0.72 0.566017
Target:  5'- gGAGGGAGAAGAaacggaacgcgGAAacgccgccggcgcGGCCCGGGGCc- -3'
miRNA:   3'- -CUCCCUCUUCU-----------CUU-------------CUGGGCUCCGua -5'
5325 3' -56.1 NC_001798.1 + 119642 0.68 0.770085
Target:  5'- aAGGGGGAAGAGAGGGg--GAGGUAg -3'
miRNA:   3'- cUCCCUCUUCUCUUCUgggCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 119616 0.69 0.721129
Target:  5'- aGGGGAGAGGAGAAGggcGCgCCGGuGCGc -3'
miRNA:   3'- cUCCCUCUUCUCUUC---UG-GGCUcCGUa -5'
5325 3' -56.1 NC_001798.1 + 118046 0.7 0.649563
Target:  5'- cAGGG-GAGGGGAGGACgCGGGGgAg -3'
miRNA:   3'- cUCCCuCUUCUCUUCUGgGCUCCgUa -5'
5325 3' -56.1 NC_001798.1 + 115296 0.66 0.871924
Target:  5'- cAGGGAcagcgccaucagcGGAGGGggGGCCUGGcGCGUg -3'
miRNA:   3'- cUCCCU-------------CUUCUCuuCUGGGCUcCGUA- -5'
5325 3' -56.1 NC_001798.1 + 114977 0.68 0.760507
Target:  5'- cGGGGGGAAGccGAccgccuGGuCCCGAGGCGc -3'
miRNA:   3'- cUCCCUCUUCu-CU------UCuGGGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 114236 0.8 0.194827
Target:  5'- cGGGGGAGggGcaAGcAGACCCGAGGCc- -3'
miRNA:   3'- -CUCCCUCuuC--UCuUCUGGGCUCCGua -5'
5325 3' -56.1 NC_001798.1 + 114168 0.67 0.857452
Target:  5'- cGAGGGuGcgu---AGGCCCGAGGCGg -3'
miRNA:   3'- -CUCCCuCuucucuUCUGGGCUCCGUa -5'
5325 3' -56.1 NC_001798.1 + 111723 0.66 0.865165
Target:  5'- -cGGGGGGAGcgcGggGcCCCGGGcGCAa -3'
miRNA:   3'- cuCCCUCUUCu--CuuCuGGGCUC-CGUa -5'
5325 3' -56.1 NC_001798.1 + 111271 0.68 0.760507
Target:  5'- cGGGGGcGGgcGuGAGGGCcgCCGGGGCAUa -3'
miRNA:   3'- -CUCCC-UCuuCuCUUCUG--GGCUCCGUA- -5'
5325 3' -56.1 NC_001798.1 + 95407 0.72 0.58753
Target:  5'- gGAGGGGGAAGGGggGuggaaaggaCgGAGGCGc -3'
miRNA:   3'- -CUCCCUCUUCUCuuCug-------GgCUCCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.