miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5326 3' -58.1 NC_001798.1 + 87154 0.66 0.82752
Target:  5'- -uGGGGAUCgGGGGC-UGCugccCCGCGu -3'
miRNA:   3'- cuCCUCUGGgCUCCGuACGuu--GGCGU- -5'
5326 3' -58.1 NC_001798.1 + 43024 0.66 0.82752
Target:  5'- cGGGGGGAgcgcggggcCCCGGGcGCAaaUGCGGCgCGUg -3'
miRNA:   3'- -CUCCUCU---------GGGCUC-CGU--ACGUUG-GCGu -5'
5326 3' -58.1 NC_001798.1 + 45998 0.66 0.82752
Target:  5'- gGGGGGGAUCCaggggaGGGCGUGgGuccCCGCGa -3'
miRNA:   3'- -CUCCUCUGGGc-----UCCGUACgUu--GGCGU- -5'
5326 3' -58.1 NC_001798.1 + 109197 0.66 0.82752
Target:  5'- gGGGGAGgACCCG-GGCuccgGCAcggACgCGCGu -3'
miRNA:   3'- -CUCCUC-UGGGCuCCGua--CGU---UG-GCGU- -5'
5326 3' -58.1 NC_001798.1 + 97612 0.66 0.822459
Target:  5'- -cGGAGAgCUGGGGCGacaucgcgacgcggGCcGCCGCGg -3'
miRNA:   3'- cuCCUCUgGGCUCCGUa-------------CGuUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 146263 0.66 0.81905
Target:  5'- aAGGAGACCCaa-GCAccGCAGCCGgAg -3'
miRNA:   3'- cUCCUCUGGGcucCGUa-CGUUGGCgU- -5'
5326 3' -58.1 NC_001798.1 + 109451 0.66 0.81905
Target:  5'- -uGGAGGCgCGccucGGGCAUcugGUGGCCGCGa -3'
miRNA:   3'- cuCCUCUGgGC----UCCGUA---CGUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 103452 0.66 0.81905
Target:  5'- aGGGGGuucuCCgGAGGCAg--GGCCGCAc -3'
miRNA:   3'- cUCCUCu---GGgCUCCGUacgUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 101911 0.66 0.81905
Target:  5'- gGAGcGGGACCgGGGGUAaccGCAACUGgGg -3'
miRNA:   3'- -CUC-CUCUGGgCUCCGUa--CGUUGGCgU- -5'
5326 3' -58.1 NC_001798.1 + 12904 0.66 0.81905
Target:  5'- -cGGGGGCuuGGGGCcGUGCcACCcgGCGa -3'
miRNA:   3'- cuCCUCUGggCUCCG-UACGuUGG--CGU- -5'
5326 3' -58.1 NC_001798.1 + 130091 0.66 0.801613
Target:  5'- cGGGcacAGGCCCGGGGCGuUGCAcucgGgCGUAg -3'
miRNA:   3'- cUCC---UCUGGGCUCCGU-ACGU----UgGCGU- -5'
5326 3' -58.1 NC_001798.1 + 99758 0.66 0.801613
Target:  5'- cGGGAuGCCCgcGAGGcCAU-CGACCGCAu -3'
miRNA:   3'- cUCCUcUGGG--CUCC-GUAcGUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 28776 0.66 0.801613
Target:  5'- gGAGGAGGag-GAGGCGgcgGCGGCgGCGc -3'
miRNA:   3'- -CUCCUCUgggCUCCGUa--CGUUGgCGU- -5'
5326 3' -58.1 NC_001798.1 + 108702 0.66 0.796261
Target:  5'- -cGGGGACaCCGAGGCAUcCGACgacgaaccugagcauCGCGc -3'
miRNA:   3'- cuCCUCUG-GGCUCCGUAcGUUG---------------GCGU- -5'
5326 3' -58.1 NC_001798.1 + 150199 0.66 0.792663
Target:  5'- uGGGGGGcggcACCgGGGGUGUuGguGCCGCGg -3'
miRNA:   3'- -CUCCUC----UGGgCUCCGUA-CguUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 34835 0.66 0.792663
Target:  5'- -cGGGGGCCCG-GGCcgG--ACCGCc -3'
miRNA:   3'- cuCCUCUGGGCuCCGuaCguUGGCGu -5'
5326 3' -58.1 NC_001798.1 + 60949 0.66 0.78995
Target:  5'- cGAGGcgcgucgugucaccGGGCCCgGAGGC--GCGGCCGUu -3'
miRNA:   3'- -CUCC--------------UCUGGG-CUCCGuaCGUUGGCGu -5'
5326 3' -58.1 NC_001798.1 + 31811 0.66 0.78995
Target:  5'- gGAGGgaGGACCCGGGGUcccccgcgGCAccaacacccccgguGCCGCc -3'
miRNA:   3'- -CUCC--UCUGGGCUCCGua------CGU--------------UGGCGu -5'
5326 3' -58.1 NC_001798.1 + 41658 0.66 0.78357
Target:  5'- gGAGGgagcGGACCgCGAgcauGGCGUGC--CCGCAu -3'
miRNA:   3'- -CUCC----UCUGG-GCU----CCGUACGuuGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 24826 0.66 0.78357
Target:  5'- -cGGGGACCUGcgcguGGCcgGCGGCaGCGa -3'
miRNA:   3'- cuCCUCUGGGCu----CCGuaCGUUGgCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.