Results 1 - 20 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 109197 | 0.66 | 0.82752 |
Target: 5'- gGGGGAGgACCCG-GGCuccgGCAcggACgCGCGu -3' miRNA: 3'- -CUCCUC-UGGGCuCCGua--CGU---UG-GCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 87154 | 0.66 | 0.82752 |
Target: 5'- -uGGGGAUCgGGGGC-UGCugccCCGCGu -3' miRNA: 3'- cuCCUCUGGgCUCCGuACGuu--GGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 43024 | 0.66 | 0.82752 |
Target: 5'- cGGGGGGAgcgcggggcCCCGGGcGCAaaUGCGGCgCGUg -3' miRNA: 3'- -CUCCUCU---------GGGCUC-CGU--ACGUUG-GCGu -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 45998 | 0.66 | 0.82752 |
Target: 5'- gGGGGGGAUCCaggggaGGGCGUGgGuccCCGCGa -3' miRNA: 3'- -CUCCUCUGGGc-----UCCGUACgUu--GGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 97612 | 0.66 | 0.822459 |
Target: 5'- -cGGAGAgCUGGGGCGacaucgcgacgcggGCcGCCGCGg -3' miRNA: 3'- cuCCUCUgGGCUCCGUa-------------CGuUGGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 12904 | 0.66 | 0.81905 |
Target: 5'- -cGGGGGCuuGGGGCcGUGCcACCcgGCGa -3' miRNA: 3'- cuCCUCUGggCUCCG-UACGuUGG--CGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 101911 | 0.66 | 0.81905 |
Target: 5'- gGAGcGGGACCgGGGGUAaccGCAACUGgGg -3' miRNA: 3'- -CUC-CUCUGGgCUCCGUa--CGUUGGCgU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 103452 | 0.66 | 0.81905 |
Target: 5'- aGGGGGuucuCCgGAGGCAg--GGCCGCAc -3' miRNA: 3'- cUCCUCu---GGgCUCCGUacgUUGGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 109451 | 0.66 | 0.81905 |
Target: 5'- -uGGAGGCgCGccucGGGCAUcugGUGGCCGCGa -3' miRNA: 3'- cuCCUCUGgGC----UCCGUA---CGUUGGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 146263 | 0.66 | 0.81905 |
Target: 5'- aAGGAGACCCaa-GCAccGCAGCCGgAg -3' miRNA: 3'- cUCCUCUGGGcucCGUa-CGUUGGCgU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 99758 | 0.66 | 0.801613 |
Target: 5'- cGGGAuGCCCgcGAGGcCAU-CGACCGCAu -3' miRNA: 3'- cUCCUcUGGG--CUCC-GUAcGUUGGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 28776 | 0.66 | 0.801613 |
Target: 5'- gGAGGAGGag-GAGGCGgcgGCGGCgGCGc -3' miRNA: 3'- -CUCCUCUgggCUCCGUa--CGUUGgCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 130091 | 0.66 | 0.801613 |
Target: 5'- cGGGcacAGGCCCGGGGCGuUGCAcucgGgCGUAg -3' miRNA: 3'- cUCC---UCUGGGCUCCGU-ACGU----UgGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 108702 | 0.66 | 0.796261 |
Target: 5'- -cGGGGACaCCGAGGCAUcCGACgacgaaccugagcauCGCGc -3' miRNA: 3'- cuCCUCUG-GGCUCCGUAcGUUG---------------GCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 150199 | 0.66 | 0.792663 |
Target: 5'- uGGGGGGcggcACCgGGGGUGUuGguGCCGCGg -3' miRNA: 3'- -CUCCUC----UGGgCUCCGUA-CguUGGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 34835 | 0.66 | 0.792663 |
Target: 5'- -cGGGGGCCCG-GGCcgG--ACCGCc -3' miRNA: 3'- cuCCUCUGGGCuCCGuaCguUGGCGu -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 60949 | 0.66 | 0.78995 |
Target: 5'- cGAGGcgcgucgugucaccGGGCCCgGAGGC--GCGGCCGUu -3' miRNA: 3'- -CUCC--------------UCUGGG-CUCCGuaCGUUGGCGu -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 31811 | 0.66 | 0.78995 |
Target: 5'- gGAGGgaGGACCCGGGGUcccccgcgGCAccaacacccccgguGCCGCc -3' miRNA: 3'- -CUCC--UCUGGGCUCCGua------CGU--------------UGGCGu -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 41658 | 0.66 | 0.78357 |
Target: 5'- gGAGGgagcGGACCgCGAgcauGGCGUGC--CCGCAu -3' miRNA: 3'- -CUCC----UCUGG-GCU----CCGUACGuuGGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 24826 | 0.66 | 0.78357 |
Target: 5'- -cGGGGACCUGcgcguGGCcgGCGGCaGCGa -3' miRNA: 3'- cuCCUCUGGGCu----CCGuaCGUUGgCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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