miRNA display CGI


Results 1 - 20 of 308 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5326 5' -66.1 NC_001798.1 + 292 0.65 0.470795
Target:  5'- uCCCCGCCCccccgaagacgccaGuCGCACCaccGCUCGCCcucGCa -3'
miRNA:   3'- uGGGGCGGG--------------C-GUGUGGa--CGGGCGG---UG- -5'
5326 5' -66.1 NC_001798.1 + 53585 0.66 0.465513
Target:  5'- cACCCUGCUCccgaagcugcugguGCGCGCCccguucaagagcggGgCCGCCGCg -3'
miRNA:   3'- -UGGGGCGGG--------------CGUGUGGa-------------CgGGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 133470 0.66 0.464635
Target:  5'- gGCCgaCGCCCugaGCGgCUGCCCcCCGCg -3'
miRNA:   3'- -UGGg-GCGGGcg-UGUgGACGGGcGGUG- -5'
5326 5' -66.1 NC_001798.1 + 71866 0.66 0.464635
Target:  5'- cGCCCC-CUCGguuCACCUGgCCGCgGCc -3'
miRNA:   3'- -UGGGGcGGGCgu-GUGGACgGGCGgUG- -5'
5326 5' -66.1 NC_001798.1 + 31170 0.66 0.464635
Target:  5'- ---gCGaCCCGCGgaACCUcccaGCCCGCCGCg -3'
miRNA:   3'- ugggGC-GGGCGUg-UGGA----CGGGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 4737 0.66 0.464635
Target:  5'- gGCCUC-CCCGgACGCCggGgCCGCCuCg -3'
miRNA:   3'- -UGGGGcGGGCgUGUGGa-CgGGCGGuG- -5'
5326 5' -66.1 NC_001798.1 + 65124 0.66 0.464635
Target:  5'- cACCaucaGCaCGCACGCCUGCacggCGUCGCg -3'
miRNA:   3'- -UGGgg--CGgGCGUGUGGACGg---GCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 3505 0.66 0.463759
Target:  5'- gGCCacggcggCCGCCaCGUGCgccaggccccaGCCgaagcgGCCCGCCGCc -3'
miRNA:   3'- -UGG-------GGCGG-GCGUG-----------UGGa-----CGGGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 147963 0.66 0.463759
Target:  5'- cACCCCcCCC-CaacaaccccaaagGCGCgUGCCCGgCCACa -3'
miRNA:   3'- -UGGGGcGGGcG-------------UGUGgACGGGC-GGUG- -5'
5326 5' -66.1 NC_001798.1 + 114362 0.66 0.45939
Target:  5'- aGCCCCucaucgcccgcgacgGCCCGCACcCCgucgagcaGCCCGUgCAUa -3'
miRNA:   3'- -UGGGG---------------CGGGCGUGuGGa-------CGGGCG-GUG- -5'
5326 5' -66.1 NC_001798.1 + 153374 0.66 0.45591
Target:  5'- gGCCgCCGCCaCGCgGCGCCggaaCCgGUCGCg -3'
miRNA:   3'- -UGG-GGCGG-GCG-UGUGGac--GGgCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 3622 0.66 0.45591
Target:  5'- cGCCgCGCCCgagauccggaaGCAgGCCUgGUCCagcGCCACg -3'
miRNA:   3'- -UGGgGCGGG-----------CGUgUGGA-CGGG---CGGUG- -5'
5326 5' -66.1 NC_001798.1 + 5300 0.66 0.45591
Target:  5'- gACgCCG-CCGCGCcCCgGCUCGCCGg -3'
miRNA:   3'- -UGgGGCgGGCGUGuGGaCGGGCGGUg -5'
5326 5' -66.1 NC_001798.1 + 50696 0.66 0.45591
Target:  5'- gUCCCGUUCuCGCAUUUGCCCGCgGg -3'
miRNA:   3'- uGGGGCGGGcGUGUGGACGGGCGgUg -5'
5326 5' -66.1 NC_001798.1 + 32787 0.66 0.45591
Target:  5'- -gCgCGCCCGCGCcgGCCggcgacGCCC-CCGCg -3'
miRNA:   3'- ugGgGCGGGCGUG--UGGa-----CGGGcGGUG- -5'
5326 5' -66.1 NC_001798.1 + 74132 0.66 0.45591
Target:  5'- uGCCCCGCgcacaCGUucuuCGCCgGCCCcuggGCCAUg -3'
miRNA:   3'- -UGGGGCGg----GCGu---GUGGaCGGG----CGGUG- -5'
5326 5' -66.1 NC_001798.1 + 34129 0.66 0.45591
Target:  5'- -gCCCGaCCCGC--GCCUGCCCcCC-Cg -3'
miRNA:   3'- ugGGGC-GGGCGugUGGACGGGcGGuG- -5'
5326 5' -66.1 NC_001798.1 + 118414 0.66 0.45591
Target:  5'- uCCCCGUgCGUGCugCUGagcccugcCCCGCCc- -3'
miRNA:   3'- uGGGGCGgGCGUGugGAC--------GGGCGGug -5'
5326 5' -66.1 NC_001798.1 + 86914 0.66 0.45591
Target:  5'- aGCgCCGggccuCCCGCAagaGCCUGC-CGUCGCa -3'
miRNA:   3'- -UGgGGC-----GGGCGUg--UGGACGgGCGGUG- -5'
5326 5' -66.1 NC_001798.1 + 29775 0.66 0.45331
Target:  5'- aACCCCgGCCCgGCACgagcucccgggcggACCccgGCCCcgagcggccGCCGCg -3'
miRNA:   3'- -UGGGG-CGGG-CGUG--------------UGGa--CGGG---------CGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.