miRNA display CGI


Results 1 - 20 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5333 5' -58.4 NC_001798.1 + 109053 0.66 0.855585
Target:  5'- cCCCAGGuauCGCGucuuuGUCcuggGGGCCCcgacGCCCg -3'
miRNA:   3'- cGGGUCUu--GCGC-----UAG----UCCGGGc---UGGG- -5'
5333 5' -58.4 NC_001798.1 + 7495 0.66 0.855585
Target:  5'- aGCCCGGuccccuACGCcccccUCGGcaGCCCgGACCCc -3'
miRNA:   3'- -CGGGUCu-----UGCGcu---AGUC--CGGG-CUGGG- -5'
5333 5' -58.4 NC_001798.1 + 35001 0.66 0.855585
Target:  5'- cGgCCGGGGCGCaccUCGGcggccaagcCCCGGCCCg -3'
miRNA:   3'- -CgGGUCUUGCGcu-AGUCc--------GGGCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 51953 0.66 0.855585
Target:  5'- uGCUCAGcGCGgGAg-GGGCCgCGcCCCc -3'
miRNA:   3'- -CGGGUCuUGCgCUagUCCGG-GCuGGG- -5'
5333 5' -58.4 NC_001798.1 + 58095 0.66 0.855585
Target:  5'- gGCCCcgcAGGGuCGCGGccgcccaGGGCCCGGCg- -3'
miRNA:   3'- -CGGG---UCUU-GCGCUag-----UCCGGGCUGgg -5'
5333 5' -58.4 NC_001798.1 + 69105 0.66 0.855585
Target:  5'- cCCCAGGGCG-GAggccucCAGGagCUGGCCCc -3'
miRNA:   3'- cGGGUCUUGCgCUa-----GUCCg-GGCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 70324 0.66 0.855585
Target:  5'- gGCCCGGcggaGGCGCGggCGuGCUgGcACCCg -3'
miRNA:   3'- -CGGGUC----UUGCGCuaGUcCGGgC-UGGG- -5'
5333 5' -58.4 NC_001798.1 + 70970 0.66 0.855585
Target:  5'- gGCCCAGuuucagcACaCGGUgCGGGagaUCGACCCg -3'
miRNA:   3'- -CGGGUCu------UGcGCUA-GUCCg--GGCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 107306 0.66 0.855585
Target:  5'- cGCCCGG---GCGAgc-GGCuuGACCUg -3'
miRNA:   3'- -CGGGUCuugCGCUaguCCGggCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 45487 0.66 0.854828
Target:  5'- uCCCAGucacccacgccGGCGacaGAUCccccguucgccccGGGCCCGugCCc -3'
miRNA:   3'- cGGGUC-----------UUGCg--CUAG-------------UCCGGGCugGG- -5'
5333 5' -58.4 NC_001798.1 + 16607 0.66 0.851015
Target:  5'- gGCCCAGGggcucgugacggacgACGCGccggggCAGGUCUugccGCCCg -3'
miRNA:   3'- -CGGGUCU---------------UGCGCua----GUCCGGGc---UGGG- -5'
5333 5' -58.4 NC_001798.1 + 103338 0.66 0.847932
Target:  5'- cGCuCCAGcugcacgcACGCGAUCAGcCCCacaaaaaacGGCCCc -3'
miRNA:   3'- -CG-GGUCu-------UGCGCUAGUCcGGG---------CUGGG- -5'
5333 5' -58.4 NC_001798.1 + 24571 0.66 0.847932
Target:  5'- cGgCCGGcGCGCGGaggCGGGCCgcgUGGCCg -3'
miRNA:   3'- -CgGGUCuUGCGCUa--GUCCGG---GCUGGg -5'
5333 5' -58.4 NC_001798.1 + 26210 0.66 0.847932
Target:  5'- cGCCUcGGGCGCGggCgacgccauGGcGCCCGGCgCg -3'
miRNA:   3'- -CGGGuCUUGCGCuaG--------UC-CGGGCUGgG- -5'
5333 5' -58.4 NC_001798.1 + 54807 0.66 0.847932
Target:  5'- uGCCCGcGGGCGU---CGGGCuuGGCgCCa -3'
miRNA:   3'- -CGGGU-CUUGCGcuaGUCCGggCUG-GG- -5'
5333 5' -58.4 NC_001798.1 + 81457 0.66 0.847932
Target:  5'- gGCCCc--ACGCccaAUCcGGCCCcGGCCCu -3'
miRNA:   3'- -CGGGucuUGCGc--UAGuCCGGG-CUGGG- -5'
5333 5' -58.4 NC_001798.1 + 85698 0.66 0.847932
Target:  5'- cGCCCAGAA-GCaaccCAGGCCgacGCCCu -3'
miRNA:   3'- -CGGGUCUUgCGcua-GUCCGGgc-UGGG- -5'
5333 5' -58.4 NC_001798.1 + 123589 0.66 0.847932
Target:  5'- -gCCAGGugGCccuUCcGGacCCCGACCCc -3'
miRNA:   3'- cgGGUCUugCGcu-AGuCC--GGGCUGGG- -5'
5333 5' -58.4 NC_001798.1 + 69816 0.66 0.847932
Target:  5'- cGCCCcacGGAAcggcCGCGAUacacuuGGUCCGGgCCg -3'
miRNA:   3'- -CGGG---UCUU----GCGCUAgu----CCGGGCUgGG- -5'
5333 5' -58.4 NC_001798.1 + 123387 0.66 0.840093
Target:  5'- cCCCAGGcgACGC---CAGGCCCcccgggagccgcGGCCCc -3'
miRNA:   3'- cGGGUCU--UGCGcuaGUCCGGG------------CUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.