miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5335 5' -56.9 NC_001798.1 + 111760 0.66 0.914393
Target:  5'- cGGUCCcgGCCAUCGguuGGggGCgCGGg -3'
miRNA:   3'- -CCAGGugUGGUGGCaguCCuaCG-GCC- -5'
5335 5' -56.9 NC_001798.1 + 1996 0.66 0.914393
Target:  5'- cGGUCCAgUugC-CCGccCAGGcgGCCGu -3'
miRNA:   3'- -CCAGGU-GugGuGGCa-GUCCuaCGGCc -5'
5335 5' -56.9 NC_001798.1 + 1741 0.66 0.914393
Target:  5'- aGGUcCCGCGCCGCCGgcCAGc--GCaCGGc -3'
miRNA:   3'- -CCA-GGUGUGGUGGCa-GUCcuaCG-GCC- -5'
5335 5' -56.9 NC_001798.1 + 122034 0.66 0.914393
Target:  5'- uGGUCCAC-CagGCCGUCAGcGGgggaGCCcuGGg -3'
miRNA:   3'- -CCAGGUGuGg-UGGCAGUC-CUa---CGG--CC- -5'
5335 5' -56.9 NC_001798.1 + 99318 0.66 0.913245
Target:  5'- cGGUCaACugCAUCGUCgAGGAgguggacgcgcgGUCGGu -3'
miRNA:   3'- -CCAGgUGugGUGGCAG-UCCUa-----------CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 52021 0.66 0.908561
Target:  5'- gGGUCCcuGCugUACUGgccCGGGGUGCgCGc -3'
miRNA:   3'- -CCAGG--UGugGUGGCa--GUCCUACG-GCc -5'
5335 5' -56.9 NC_001798.1 + 5963 0.66 0.908561
Target:  5'- cGUCCcgguCGCCGCCGcacCAGGGgacaCCGGc -3'
miRNA:   3'- cCAGGu---GUGGUGGCa--GUCCUac--GGCC- -5'
5335 5' -56.9 NC_001798.1 + 37163 0.66 0.908561
Target:  5'- --gCCGCGCCGCCuggCGGGccGCuCGGc -3'
miRNA:   3'- ccaGGUGUGGUGGca-GUCCuaCG-GCC- -5'
5335 5' -56.9 NC_001798.1 + 136587 0.66 0.908561
Target:  5'- aGG-CCACACaguCCGUgCGGGGgacggGcCCGGg -3'
miRNA:   3'- -CCaGGUGUGgu-GGCA-GUCCUa----C-GGCC- -5'
5335 5' -56.9 NC_001798.1 + 13031 0.66 0.902504
Target:  5'- aGGUgaggCACGCUGCCGggGGGAUGCgcaGGg -3'
miRNA:   3'- -CCAg---GUGUGGUGGCagUCCUACGg--CC- -5'
5335 5' -56.9 NC_001798.1 + 19046 0.66 0.902504
Target:  5'- cGG-CUAUACCACC-UguGGGUgGUCGGg -3'
miRNA:   3'- -CCaGGUGUGGUGGcAguCCUA-CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 73917 0.66 0.902504
Target:  5'- uGUCCGCggagGCCAUCGa-GGGAUGuCUGGu -3'
miRNA:   3'- cCAGGUG----UGGUGGCagUCCUAC-GGCC- -5'
5335 5' -56.9 NC_001798.1 + 77402 0.66 0.902504
Target:  5'- gGGUCgGCgGCCGCCGaccugguagucCAGGcgcGCCGGg -3'
miRNA:   3'- -CCAGgUG-UGGUGGCa----------GUCCua-CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 96910 0.66 0.902504
Target:  5'- --cCCACGCCGCCGggCugucGGAcGCCGc -3'
miRNA:   3'- ccaGGUGUGGUGGCa-Gu---CCUaCGGCc -5'
5335 5' -56.9 NC_001798.1 + 3813 0.66 0.900019
Target:  5'- gGGcCCGCGCCuccuCCGccUCGGGcgccccccagagGCCGGg -3'
miRNA:   3'- -CCaGGUGUGGu---GGC--AGUCCua----------CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 88139 0.66 0.896225
Target:  5'- gGGUCUGgGCCACgaucaCGUaCGGGAU-CCGGu -3'
miRNA:   3'- -CCAGGUgUGGUG-----GCA-GUCCUAcGGCC- -5'
5335 5' -56.9 NC_001798.1 + 30862 0.66 0.895585
Target:  5'- cGGUCCGCGCC-CUGUCGcccacccccccguGGcccgGCaCGGa -3'
miRNA:   3'- -CCAGGUGUGGuGGCAGU-------------CCua--CG-GCC- -5'
5335 5' -56.9 NC_001798.1 + 105450 0.66 0.889725
Target:  5'- cGcCCGCuccGCCGCCGUCucccggGGGAUGuuGa -3'
miRNA:   3'- cCaGGUG---UGGUGGCAG------UCCUACggCc -5'
5335 5' -56.9 NC_001798.1 + 105719 0.66 0.889725
Target:  5'- cGGUCgACACCcaggggcuGuuGUCGGGugggugucGCCGGc -3'
miRNA:   3'- -CCAGgUGUGG--------UggCAGUCCua------CGGCC- -5'
5335 5' -56.9 NC_001798.1 + 85654 0.66 0.889725
Target:  5'- -cUCCACugCugcuuccggACCGacggCGGGGUGcCCGGg -3'
miRNA:   3'- ccAGGUGugG---------UGGCa---GUCCUAC-GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.