miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5351 3' -55.5 NC_001798.1 + 153691 0.65 0.926621
Target:  5'- -gCGGGGGcCGCCGccggcgcaggcuCAGgcGCGCCa -3'
miRNA:   3'- caGCCCCU-GCGGUuu----------GUCuuCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 27148 0.66 0.923351
Target:  5'- -aCGGGG-CGCgGGAgGGAggGGCugCUg -3'
miRNA:   3'- caGCCCCuGCGgUUUgUCU--UCGugGA- -5'
5351 3' -55.5 NC_001798.1 + 32323 0.66 0.923351
Target:  5'- -gCGGGGGCcgaggaaguguGCCAGGaAGAcGCGCCa -3'
miRNA:   3'- caGCCCCUG-----------CGGUUUgUCUuCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 10286 0.66 0.923351
Target:  5'- cGUCGGGGGgGC--GACGGggGgACg- -3'
miRNA:   3'- -CAGCCCCUgCGguUUGUCuuCgUGga -5'
5351 3' -55.5 NC_001798.1 + 78947 0.66 0.917707
Target:  5'- gGUCuGGGGuCGCUuuGGCcgcguccggGGggGCGCCUg -3'
miRNA:   3'- -CAG-CCCCuGCGGu-UUG---------UCuuCGUGGA- -5'
5351 3' -55.5 NC_001798.1 + 94579 0.66 0.917707
Target:  5'- -gCGcGGGuCGCCAGccucCAGA-GCGCCUa -3'
miRNA:   3'- caGC-CCCuGCGGUUu---GUCUuCGUGGA- -5'
5351 3' -55.5 NC_001798.1 + 54383 0.66 0.917707
Target:  5'- -cCGGGGG-GCCGcggcgcggucGGCGGGAGCuGCCg -3'
miRNA:   3'- caGCCCCUgCGGU----------UUGUCUUCG-UGGa -5'
5351 3' -55.5 NC_001798.1 + 116521 0.66 0.917707
Target:  5'- -gCGGGGGCGCU--GCu---GCACCg -3'
miRNA:   3'- caGCCCCUGCGGuuUGucuuCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 73256 0.66 0.914204
Target:  5'- -cCGGGGACcuggaggcccaagauGCC-GGCGGuAGCACCc -3'
miRNA:   3'- caGCCCCUG---------------CGGuUUGUCuUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 39441 0.66 0.91182
Target:  5'- -gCGGGGgggucagggacaGCGCCAucAGCGGAgggGGgGCCUg -3'
miRNA:   3'- caGCCCC------------UGCGGU--UUGUCU---UCgUGGA- -5'
5351 3' -55.5 NC_001798.1 + 39705 0.66 0.91182
Target:  5'- cUCGGGGAUGCgGugccuuggucGACGGggGUuggaugcggGCCa -3'
miRNA:   3'- cAGCCCCUGCGgU----------UUGUCuuCG---------UGGa -5'
5351 3' -55.5 NC_001798.1 + 29379 0.66 0.91182
Target:  5'- -cCGGGGGCGggcaCCAcuCAGGGccGCGCCg -3'
miRNA:   3'- caGCCCCUGC----GGUuuGUCUU--CGUGGa -5'
5351 3' -55.5 NC_001798.1 + 124890 0.66 0.91182
Target:  5'- -aCGGuGGCGCgCuGGCGGAAGUGCCg -3'
miRNA:   3'- caGCCcCUGCG-GuUUGUCUUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 113339 0.66 0.91182
Target:  5'- ---cGGGugGaCCGGACGGGcgguGGCGCCg -3'
miRNA:   3'- cagcCCCugC-GGUUUGUCU----UCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 147009 0.66 0.905693
Target:  5'- cUCGGGGACccCCGGGCGGGccggGGCuugGCCg -3'
miRNA:   3'- cAGCCCCUGc-GGUUUGUCU----UCG---UGGa -5'
5351 3' -55.5 NC_001798.1 + 146419 0.66 0.905693
Target:  5'- -aCGGGGcgaGCCGGGCAGAGuGCggaGCCc -3'
miRNA:   3'- caGCCCCug-CGGUUUGUCUU-CG---UGGa -5'
5351 3' -55.5 NC_001798.1 + 135860 0.66 0.905693
Target:  5'- uUCGGGaGGCGUCuGGACGcGGAGUACUg -3'
miRNA:   3'- cAGCCC-CUGCGG-UUUGU-CUUCGUGGa -5'
5351 3' -55.5 NC_001798.1 + 49980 0.66 0.905693
Target:  5'- cUCGGaGGGCGaguCCGucauGCGGGAGCACg- -3'
miRNA:   3'- cAGCC-CCUGC---GGUu---UGUCUUCGUGga -5'
5351 3' -55.5 NC_001798.1 + 76493 0.66 0.899327
Target:  5'- cUCGGGGcugGCCGAACuGcAGCGCUUc -3'
miRNA:   3'- cAGCCCCug-CGGUUUGuCuUCGUGGA- -5'
5351 3' -55.5 NC_001798.1 + 77403 0.66 0.899327
Target:  5'- gGUCGGcGGcCGCCGAccugguagucCAGgcGCGCCg -3'
miRNA:   3'- -CAGCC-CCuGCGGUUu---------GUCuuCGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.