miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5361 3' -58.2 NC_001798.1 + 135936 0.66 0.820539
Target:  5'- -cGGCcuucCGCGGAGGCGcCCugCUGg -3'
miRNA:   3'- uaCUGucuuGCGUCUCCGC-GGugGGC- -5'
5361 3' -58.2 NC_001798.1 + 56762 0.66 0.819686
Target:  5'- cUGGCAGGugaagguGCGCGGGGGgcccugGCCGCCg- -3'
miRNA:   3'- uACUGUCU-------UGCGUCUCCg-----CGGUGGgc -5'
5361 3' -58.2 NC_001798.1 + 67840 0.66 0.811066
Target:  5'- cGUGAgGGcuCGCAGGagaguGGCGCCGucaagucCCCGa -3'
miRNA:   3'- -UACUgUCuuGCGUCU-----CCGCGGU-------GGGC- -5'
5361 3' -58.2 NC_001798.1 + 97432 0.66 0.80317
Target:  5'- --aGCAGuGCGacgaGGAGGCGCUGCgCCGc -3'
miRNA:   3'- uacUGUCuUGCg---UCUCCGCGGUG-GGC- -5'
5361 3' -58.2 NC_001798.1 + 71405 0.66 0.802285
Target:  5'- gGUGGCGGGggugcccGCGCGGA--CGCCcCCCGg -3'
miRNA:   3'- -UACUGUCU-------UGCGUCUccGCGGuGGGC- -5'
5361 3' -58.2 NC_001798.1 + 91640 0.66 0.794253
Target:  5'- -nGGguGAGCGUgacgucaaaGGGGGCgugGCCGCCCu -3'
miRNA:   3'- uaCUguCUUGCG---------UCUCCG---CGGUGGGc -5'
5361 3' -58.2 NC_001798.1 + 5277 0.66 0.794253
Target:  5'- ----gAGGACGCGGAGGaggagcgaucgaCGCCGCCgCGc -3'
miRNA:   3'- uacugUCUUGCGUCUCC------------GCGGUGG-GC- -5'
5361 3' -58.2 NC_001798.1 + 105194 0.66 0.794253
Target:  5'- -cGGCGGGGCccGCGGugggcgacGGCGCUGCCCc -3'
miRNA:   3'- uaCUGUCUUG--CGUCu-------CCGCGGUGGGc -5'
5361 3' -58.2 NC_001798.1 + 145389 0.66 0.794253
Target:  5'- -cGAgGGGcgACGCGGGGaaagcGCGCCcccGCCCGg -3'
miRNA:   3'- uaCUgUCU--UGCGUCUC-----CGCGG---UGGGC- -5'
5361 3' -58.2 NC_001798.1 + 142483 0.66 0.793353
Target:  5'- -gGACGGcccccgaggcGGCGCGGGGGUGCgauaacgCACCCc -3'
miRNA:   3'- uaCUGUC----------UUGCGUCUCCGCG-------GUGGGc -5'
5361 3' -58.2 NC_001798.1 + 110625 0.66 0.785191
Target:  5'- gGUGuguGGACGCAGcGGCGUCcacGCCCa -3'
miRNA:   3'- -UACuguCUUGCGUCuCCGCGG---UGGGc -5'
5361 3' -58.2 NC_001798.1 + 151185 0.66 0.785191
Target:  5'- -cGACAGGGCGCGGAccGuGUGUCcCCCc -3'
miRNA:   3'- uaCUGUCUUGCGUCU--C-CGCGGuGGGc -5'
5361 3' -58.2 NC_001798.1 + 27543 0.67 0.775993
Target:  5'- --cGCGGcGCGCggggggAGGGGCGgCGCCCGc -3'
miRNA:   3'- uacUGUCuUGCG------UCUCCGCgGUGGGC- -5'
5361 3' -58.2 NC_001798.1 + 115901 0.67 0.775993
Target:  5'- --cGCGGGGCGUucGAGGaccgcaGCUACCCGg -3'
miRNA:   3'- uacUGUCUUGCGu-CUCCg-----CGGUGGGC- -5'
5361 3' -58.2 NC_001798.1 + 70937 0.67 0.775993
Target:  5'- -cGAuCGGGGCGCGGuGGUcccGCCGCCg- -3'
miRNA:   3'- uaCU-GUCUUGCGUCuCCG---CGGUGGgc -5'
5361 3' -58.2 NC_001798.1 + 16228 0.67 0.775993
Target:  5'- nGUGGgGGGGCGguGGGGCcgggGCCcucCCCGc -3'
miRNA:   3'- -UACUgUCUUGCguCUCCG----CGGu--GGGC- -5'
5361 3' -58.2 NC_001798.1 + 143493 0.67 0.773209
Target:  5'- -gGAUAGuaAACGCAGAGGgGaCCcucucuucccccacGCCCGa -3'
miRNA:   3'- uaCUGUC--UUGCGUCUCCgC-GG--------------UGGGC- -5'
5361 3' -58.2 NC_001798.1 + 121720 0.67 0.766669
Target:  5'- -cGACGGAG-GCGGcGGC-CCACCUGu -3'
miRNA:   3'- uaCUGUCUUgCGUCuCCGcGGUGGGC- -5'
5361 3' -58.2 NC_001798.1 + 43070 0.67 0.766669
Target:  5'- -cGGCcGAGCGCGccgggcucGGGCGCCGCCg- -3'
miRNA:   3'- uaCUGuCUUGCGUc-------UCCGCGGUGGgc -5'
5361 3' -58.2 NC_001798.1 + 70316 0.67 0.766669
Target:  5'- -cGGCGGucGGCccgGCGGAGGCGCgggcgugcuggCACCCGc -3'
miRNA:   3'- uaCUGUC--UUG---CGUCUCCGCG-----------GUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.