miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5361 5' -56.6 NC_001798.1 + 150438 0.66 0.924023
Target:  5'- gGGCGGAcuccgGACGCgcggggcgacggCCGCGCgGg-- -3'
miRNA:   3'- -CCGCCUa----CUGCGaaa---------GGCGCGgCagg -5'
5361 5' -56.6 NC_001798.1 + 134073 0.66 0.921869
Target:  5'- cGCGGGggaGGCGCg--CgCGCGCUucgcggagguGUCCg -3'
miRNA:   3'- cCGCCUa--CUGCGaaaG-GCGCGG----------CAGG- -5'
5361 5' -56.6 NC_001798.1 + 130199 0.66 0.921869
Target:  5'- cGGCGuGGUGggacACGCUcgcguaggggguUUCCGCGuaGcCCg -3'
miRNA:   3'- -CCGC-CUAC----UGCGA------------AAGGCGCggCaGG- -5'
5361 5' -56.6 NC_001798.1 + 100794 0.66 0.921869
Target:  5'- gGGCGGGUGuCgGCcgUCuCGgGCgUGUCCu -3'
miRNA:   3'- -CCGCCUACuG-CGaaAG-GCgCG-GCAGG- -5'
5361 5' -56.6 NC_001798.1 + 50222 0.66 0.921869
Target:  5'- aGGUGGAuaUGACGCccgCCGaCGCCc--- -3'
miRNA:   3'- -CCGCCU--ACUGCGaaaGGC-GCGGcagg -5'
5361 5' -56.6 NC_001798.1 + 35195 0.66 0.921325
Target:  5'- cGGCGGcgGGCcccugcguucguuGCUg-CCGCGCCc-CCg -3'
miRNA:   3'- -CCGCCuaCUG-------------CGAaaGGCGCGGcaGG- -5'
5361 5' -56.6 NC_001798.1 + 71137 0.66 0.918571
Target:  5'- uGCGGAcgGACGCgg-CCGUcuucgaccccgacguGCCGUUUc -3'
miRNA:   3'- cCGCCUa-CUGCGaaaGGCG---------------CGGCAGG- -5'
5361 5' -56.6 NC_001798.1 + 56066 0.66 0.916891
Target:  5'- gGGCGGGgcgcucucuuccggaGGCGUUUggagCCcacgcggcguGCGCCGUUCg -3'
miRNA:   3'- -CCGCCUa--------------CUGCGAAa---GG----------CGCGGCAGG- -5'
5361 5' -56.6 NC_001798.1 + 7885 0.66 0.916326
Target:  5'- uGGCGGAcggccgccaUGAauuuuaucgcCGCgg-CUGCGCCcugcGUCCa -3'
miRNA:   3'- -CCGCCU---------ACU----------GCGaaaGGCGCGG----CAGG- -5'
5361 5' -56.6 NC_001798.1 + 22928 0.66 0.916326
Target:  5'- aGGCcGAcGACGCcg-CCGCcgauGCCGUgCCg -3'
miRNA:   3'- -CCGcCUaCUGCGaaaGGCG----CGGCA-GG- -5'
5361 5' -56.6 NC_001798.1 + 92328 0.66 0.916326
Target:  5'- aGCGGc-GACGCgga-CGuCGCCGUCg -3'
miRNA:   3'- cCGCCuaCUGCGaaagGC-GCGGCAGg -5'
5361 5' -56.6 NC_001798.1 + 134690 0.66 0.916326
Target:  5'- cGCGGGUGcUGCUg-CCGCGCgG-CUa -3'
miRNA:   3'- cCGCCUACuGCGAaaGGCGCGgCaGG- -5'
5361 5' -56.6 NC_001798.1 + 77728 0.66 0.916326
Target:  5'- cGGCGucGAggcGGCGCUggaCCGCGUCGagaaCCg -3'
miRNA:   3'- -CCGC--CUa--CUGCGAaa-GGCGCGGCa---GG- -5'
5361 5' -56.6 NC_001798.1 + 88097 0.66 0.916326
Target:  5'- cGCGGAgGGCgGCcagCCGCGCgacCGUCUc -3'
miRNA:   3'- cCGCCUaCUG-CGaaaGGCGCG---GCAGG- -5'
5361 5' -56.6 NC_001798.1 + 91267 0.66 0.916326
Target:  5'- cGGCGGcaaGGCGg---CgGUGCCGUCUg -3'
miRNA:   3'- -CCGCCua-CUGCgaaaGgCGCGGCAGG- -5'
5361 5' -56.6 NC_001798.1 + 100886 0.66 0.916326
Target:  5'- cGCGGccuucuuCGCcUUCCGCuaCGUCCu -3'
miRNA:   3'- cCGCCuacu---GCGaAAGGCGcgGCAGG- -5'
5361 5' -56.6 NC_001798.1 + 53896 0.66 0.910555
Target:  5'- cGCGGA-GACGUUUg-CGCGCCa-CCu -3'
miRNA:   3'- cCGCCUaCUGCGAAagGCGCGGcaGG- -5'
5361 5' -56.6 NC_001798.1 + 50094 0.66 0.910555
Target:  5'- uGCGGAggccgggcugGugGCg--CCGCGCaUGUCg -3'
miRNA:   3'- cCGCCUa---------CugCGaaaGGCGCG-GCAGg -5'
5361 5' -56.6 NC_001798.1 + 25584 0.66 0.910555
Target:  5'- gGGCGaGGaccUGGcCGCgggCCGCGCCGg-- -3'
miRNA:   3'- -CCGC-CU---ACU-GCGaaaGGCGCGGCagg -5'
5361 5' -56.6 NC_001798.1 + 147227 0.66 0.908779
Target:  5'- cGGCGGAgcgcgGGgGCcccggggccccgggCCGCGCCGgcggcguuUCCg -3'
miRNA:   3'- -CCGCCUa----CUgCGaaa-----------GGCGCGGC--------AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.