miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5364 3' -58.4 NC_001798.1 + 150003 0.66 0.814961
Target:  5'- ----cGGGGCGAgCGGCccguggCCGCGGUCGc -3'
miRNA:   3'- cucuaCCUCGCU-GCCGa-----GGUGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 77022 0.66 0.814961
Target:  5'- ----cGGAuaccGCGACGGCUCUggcCGGCCu -3'
miRNA:   3'- cucuaCCU----CGCUGCCGAGGu--GUCGGu -5'
5364 3' -58.4 NC_001798.1 + 105390 0.66 0.800971
Target:  5'- ---cUGGAG-GGCGGCguucuccagggccgCCGCGGCCGc -3'
miRNA:   3'- cucuACCUCgCUGCCGa-------------GGUGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 134945 0.66 0.797412
Target:  5'- -uGAccUGGuGCGG-GGCgCCGCGGCCAc -3'
miRNA:   3'- cuCU--ACCuCGCUgCCGaGGUGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 2506 0.66 0.797412
Target:  5'- ----cGGGGCG-CGGCggCCGCGGCg- -3'
miRNA:   3'- cucuaCCUCGCuGCCGa-GGUGUCGgu -5'
5364 3' -58.4 NC_001798.1 + 15700 0.66 0.797412
Target:  5'- -uGcgGGGGCGGuCGGUUCCGC-GCUu -3'
miRNA:   3'- cuCuaCCUCGCU-GCCGAGGUGuCGGu -5'
5364 3' -58.4 NC_001798.1 + 59662 0.66 0.797412
Target:  5'- aGAGggGGGGCGAcuCGGCUCgCguggggGCGGCgGg -3'
miRNA:   3'- -CUCuaCCUCGCU--GCCGAG-G------UGUCGgU- -5'
5364 3' -58.4 NC_001798.1 + 27247 0.66 0.797412
Target:  5'- -cGggGGAGgCGgccGCGGgaCCGCAGCCc -3'
miRNA:   3'- cuCuaCCUC-GC---UGCCgaGGUGUCGGu -5'
5364 3' -58.4 NC_001798.1 + 56514 0.66 0.788412
Target:  5'- aGGGUGGAGCGGaucgUGGCggugCCGgGGCg- -3'
miRNA:   3'- cUCUACCUCGCU----GCCGa---GGUgUCGgu -5'
5364 3' -58.4 NC_001798.1 + 109377 0.66 0.779275
Target:  5'- ----gGGAGCaGCgGGCUgCGCGGCCGa -3'
miRNA:   3'- cucuaCCUCGcUG-CCGAgGUGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 4635 0.66 0.779275
Target:  5'- cGGggGGGGCGACGGgaUCgugcgaACGGCCu -3'
miRNA:   3'- cUCuaCCUCGCUGCCgaGG------UGUCGGu -5'
5364 3' -58.4 NC_001798.1 + 62456 0.66 0.770007
Target:  5'- -cGGUGGGccgcGCGACGGCgCC-CGGUCGu -3'
miRNA:   3'- cuCUACCU----CGCUGCCGaGGuGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 23680 0.66 0.770007
Target:  5'- -cGGUGGccggccGCGACGccacgggccGCUUCACGGCCGg -3'
miRNA:   3'- cuCUACCu-----CGCUGC---------CGAGGUGUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 75455 0.67 0.760619
Target:  5'- aGGccGGGGUGGcCGGCccggCCGCGGCCc -3'
miRNA:   3'- cUCuaCCUCGCU-GCCGa---GGUGUCGGu -5'
5364 3' -58.4 NC_001798.1 + 53966 0.67 0.741515
Target:  5'- ---cUGcGGGCGGCGGUcagcgacgUCCugGGCCAc -3'
miRNA:   3'- cucuAC-CUCGCUGCCG--------AGGugUCGGU- -5'
5364 3' -58.4 NC_001798.1 + 74208 0.67 0.741515
Target:  5'- uGGGcAUGGGGCucuaccggGACGGCgaCACGGCCu -3'
miRNA:   3'- -CUC-UACCUCG--------CUGCCGagGUGUCGGu -5'
5364 3' -58.4 NC_001798.1 + 37991 0.67 0.730843
Target:  5'- gGGGAUgcaccGGAGacguccuUGAUGGUUCCGCAGCUg -3'
miRNA:   3'- -CUCUA-----CCUC-------GCUGCCGAGGUGUCGGu -5'
5364 3' -58.4 NC_001798.1 + 20775 0.67 0.722035
Target:  5'- ----gGGAGCGACGGCgcccgCCGCGuaggucucccGCCu -3'
miRNA:   3'- cucuaCCUCGCUGCCGa----GGUGU----------CGGu -5'
5364 3' -58.4 NC_001798.1 + 43674 0.67 0.722035
Target:  5'- cGGGGcUGGGGuCGugGGUggUCACGGCCc -3'
miRNA:   3'- -CUCU-ACCUC-GCugCCGa-GGUGUCGGu -5'
5364 3' -58.4 NC_001798.1 + 96983 0.67 0.712177
Target:  5'- -cGcgGcGGGCGGCGGggCCAgGGCCGg -3'
miRNA:   3'- cuCuaC-CUCGCUGCCgaGGUgUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.