miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5364 5' -61.9 NC_001798.1 + 102912 0.66 0.677287
Target:  5'- cGcCGCCGCuCGGCCAcaaGGCUCcagcggUCACg -3'
miRNA:   3'- cCaGCGGCG-GCCGGUc--UCGAGa-----GGUG- -5'
5364 5' -61.9 NC_001798.1 + 28252 0.66 0.677287
Target:  5'- cGcCGCCGCCGcGCaaGGAGCgCgggCCGCa -3'
miRNA:   3'- cCaGCGGCGGC-CGg-UCUCGaGa--GGUG- -5'
5364 5' -61.9 NC_001798.1 + 133205 0.66 0.677287
Target:  5'- --aCGCCGCCGgagaGCUGGAGCUUguggccCUACa -3'
miRNA:   3'- ccaGCGGCGGC----CGGUCUCGAGa-----GGUG- -5'
5364 5' -61.9 NC_001798.1 + 69155 0.66 0.677287
Target:  5'- cGGUCuGCCgGCCGGgCGGAGCccgauggCgggCCAg -3'
miRNA:   3'- -CCAG-CGG-CGGCCgGUCUCGa------Ga--GGUg -5'
5364 5' -61.9 NC_001798.1 + 94583 0.66 0.667514
Target:  5'- gGGUCGCCaGCCu-CCAGAGCgcCUaCCAg -3'
miRNA:   3'- -CCAGCGG-CGGccGGUCUCGa-GA-GGUg -5'
5364 5' -61.9 NC_001798.1 + 4907 0.66 0.667514
Target:  5'- cGGg-GCCGCCGGUCG----UCUCCGCc -3'
miRNA:   3'- -CCagCGGCGGCCGGUcucgAGAGGUG- -5'
5364 5' -61.9 NC_001798.1 + 54394 0.66 0.667514
Target:  5'- cGG-CGCgGUCGGCgGGAGCUg-CCGg -3'
miRNA:   3'- -CCaGCGgCGGCCGgUCUCGAgaGGUg -5'
5364 5' -61.9 NC_001798.1 + 115327 0.66 0.667514
Target:  5'- uGGUgccCGCCcCCGGCCacccGGAGC-C-CCGCg -3'
miRNA:   3'- -CCA---GCGGcGGCCGG----UCUCGaGaGGUG- -5'
5364 5' -61.9 NC_001798.1 + 2254 0.66 0.667514
Target:  5'- cGGgcgCGCCGCCGGggggCGGGGCggcgCagCGCg -3'
miRNA:   3'- -CCa--GCGGCGGCCg---GUCUCGa---GagGUG- -5'
5364 5' -61.9 NC_001798.1 + 97007 0.66 0.667514
Target:  5'- cGGccCGCCGCCcGCCGauAGCUCuucugUCCGCg -3'
miRNA:   3'- -CCa-GCGGCGGcCGGUc-UCGAG-----AGGUG- -5'
5364 5' -61.9 NC_001798.1 + 91868 0.66 0.666535
Target:  5'- cGGcCGCC-CCGGCCgAGcauacccAGCUCUgggCCGCc -3'
miRNA:   3'- -CCaGCGGcGGCCGG-UC-------UCGAGA---GGUG- -5'
5364 5' -61.9 NC_001798.1 + 153956 0.66 0.666535
Target:  5'- --gCGCCGCaggagcgaggacgCGGCCGGcgcGCUCUCgACc -3'
miRNA:   3'- ccaGCGGCG-------------GCCGGUCu--CGAGAGgUG- -5'
5364 5' -61.9 NC_001798.1 + 150886 0.66 0.661637
Target:  5'- gGGUCGCCcCCGcaccgccgcccccgcGCCGGGgcGCUCUUCGg -3'
miRNA:   3'- -CCAGCGGcGGC---------------CGGUCU--CGAGAGGUg -5'
5364 5' -61.9 NC_001798.1 + 20580 0.66 0.657714
Target:  5'- --cCGCaCGCCGGUCgggGGAGCUCguuaaUCGCa -3'
miRNA:   3'- ccaGCG-GCGGCCGG---UCUCGAGa----GGUG- -5'
5364 5' -61.9 NC_001798.1 + 26007 0.66 0.657714
Target:  5'- ---gGCCGCguguucgGGCCGGGGgUCUUCGCg -3'
miRNA:   3'- ccagCGGCGg------CCGGUCUCgAGAGGUG- -5'
5364 5' -61.9 NC_001798.1 + 43116 0.66 0.657714
Target:  5'- cGGUCGCUuCCGGCgGGcGCgcgUC-CCGCg -3'
miRNA:   3'- -CCAGCGGcGGCCGgUCuCG---AGaGGUG- -5'
5364 5' -61.9 NC_001798.1 + 132492 0.66 0.657714
Target:  5'- aGUCGCUgggGCgGGUaCGGA-CUCUCCGCa -3'
miRNA:   3'- cCAGCGG---CGgCCG-GUCUcGAGAGGUG- -5'
5364 5' -61.9 NC_001798.1 + 150809 0.66 0.657714
Target:  5'- cGGggCGCCGCC-GCUGcuGCUgCUCCGCg -3'
miRNA:   3'- -CCa-GCGGCGGcCGGUcuCGA-GAGGUG- -5'
5364 5' -61.9 NC_001798.1 + 141119 0.66 0.647896
Target:  5'- gGGaCGCCGCCGGCgcaucggcaacCAGGGC-CgCCGa -3'
miRNA:   3'- -CCaGCGGCGGCCG-----------GUCUCGaGaGGUg -5'
5364 5' -61.9 NC_001798.1 + 104751 0.66 0.647896
Target:  5'- cGUCGCCGauuaccgCGGCCAGAcGCg--CCAg -3'
miRNA:   3'- cCAGCGGCg------GCCGGUCU-CGagaGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.