miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5368 3' -48.5 NC_001798.1 + 97719 0.65 0.999694
Target:  5'- uGCGuGCGCgAGCAgcgCGGGGAGcucgagaagaugcuGCGGGu -3'
miRNA:   3'- cCGCuUGUG-UUGUa--GCCCUUU--------------UGCCU- -5'
5368 3' -48.5 NC_001798.1 + 39800 0.66 0.99964
Target:  5'- cGCGAccACACgccgGugGUCGcGGguGGCGGAu -3'
miRNA:   3'- cCGCU--UGUG----UugUAGC-CCuuUUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 28174 0.66 0.99964
Target:  5'- gGGCGAACagccccccgaGCGAgGgCGGGggGAaggcgcCGGAg -3'
miRNA:   3'- -CCGCUUG----------UGUUgUaGCCCuuUU------GCCU- -5'
5368 3' -48.5 NC_001798.1 + 129290 0.66 0.99964
Target:  5'- cGGCaGGCACcGCG-CGGGc--GCGGAg -3'
miRNA:   3'- -CCGcUUGUGuUGUaGCCCuuuUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 102450 0.66 0.99964
Target:  5'- cGCGAACA--GCAUacccggguaCGGGugGGCGGGa -3'
miRNA:   3'- cCGCUUGUguUGUA---------GCCCuuUUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 77214 0.66 0.99964
Target:  5'- cGGUGGACGCGGCcgugCGGGcGcAUGGc -3'
miRNA:   3'- -CCGCUUGUGUUGua--GCCCuUuUGCCu -5'
5368 3' -48.5 NC_001798.1 + 41369 0.66 0.99964
Target:  5'- cGGCGGcuCAUGGCGcCGGGGAuggcCGGGa -3'
miRNA:   3'- -CCGCUu-GUGUUGUaGCCCUUuu--GCCU- -5'
5368 3' -48.5 NC_001798.1 + 16978 0.66 0.99964
Target:  5'- cGGCaGGCGCAGCAacuccgCGGcGcuuGGGCGGAg -3'
miRNA:   3'- -CCGcUUGUGUUGUa-----GCC-Cu--UUUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 130625 0.66 0.999588
Target:  5'- gGGCGAACAgCGucgucaggcagaugaGCAugcUCGGG---GCGGAa -3'
miRNA:   3'- -CCGCUUGU-GU---------------UGU---AGCCCuuuUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 121870 0.66 0.999549
Target:  5'- aGGCG-ACACGGCcacCGcGGAGGACGu- -3'
miRNA:   3'- -CCGCuUGUGUUGua-GC-CCUUUUGCcu -5'
5368 3' -48.5 NC_001798.1 + 72840 0.66 0.999549
Target:  5'- aGGCcgcacGCGCGGCA-CGGGccccGAGCGGGu -3'
miRNA:   3'- -CCGcu---UGUGUUGUaGCCCu---UUUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 15387 0.66 0.999549
Target:  5'- cGGCGGAgGCGcccACcggaccCGGGGuuGCGGGu -3'
miRNA:   3'- -CCGCUUgUGU---UGua----GCCCUuuUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 30500 0.66 0.999549
Target:  5'- gGGUGGGCcCGugGgugaGGaGGAAGCGGAa -3'
miRNA:   3'- -CCGCUUGuGUugUag--CC-CUUUUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 35059 0.66 0.999549
Target:  5'- aGGCGGACccucggaGGCG-CGGaaGAAGACGGGa -3'
miRNA:   3'- -CCGCUUGug-----UUGUaGCC--CUUUUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 146562 0.66 0.999549
Target:  5'- cGCGGGC-CAGCAgaCGGGcc-GCGGGc -3'
miRNA:   3'- cCGCUUGuGUUGUa-GCCCuuuUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 73668 0.66 0.999539
Target:  5'- cGGCGGAaACAACAguacucaUCGGGAcgccCGGc -3'
miRNA:   3'- -CCGCUUgUGUUGU-------AGCCCUuuu-GCCu -5'
5368 3' -48.5 NC_001798.1 + 108893 0.66 0.999438
Target:  5'- uGCGcGCGCGAUA-CGGGAAGggcuucAUGGGg -3'
miRNA:   3'- cCGCuUGUGUUGUaGCCCUUU------UGCCU- -5'
5368 3' -48.5 NC_001798.1 + 39686 0.66 0.999438
Target:  5'- cGGCGAccuCGCcgcccGCcUCGGGGAuGCGGu -3'
miRNA:   3'- -CCGCUu--GUGu----UGuAGCCCUUuUGCCu -5'
5368 3' -48.5 NC_001798.1 + 146290 0.66 0.999438
Target:  5'- aGGcCGAGCggggaguggGCGGCcgggCGGGAGgauGGCGGAg -3'
miRNA:   3'- -CC-GCUUG---------UGUUGua--GCCCUU---UUGCCU- -5'
5368 3' -48.5 NC_001798.1 + 136972 0.66 0.999438
Target:  5'- cGGUGcAGCAgAACGagGGGggGcACGGc -3'
miRNA:   3'- -CCGC-UUGUgUUGUagCCCuuU-UGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.