miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5382 3' -58.9 NC_001798.1 + 11633 0.66 0.804121
Target:  5'- cGCGGG-CGCGGGCGucccugugucccCGGGggcGGGGGUCg -3'
miRNA:   3'- uUGUCUgGCGCCUGU------------GCCU---CCCUCAG- -5'
5382 3' -58.9 NC_001798.1 + 42177 0.66 0.804121
Target:  5'- --gGGGCCGCGGAaaaCAUGGGcGGGGcGUg -3'
miRNA:   3'- uugUCUGGCGCCU---GUGCCU-CCCU-CAg -5'
5382 3' -58.9 NC_001798.1 + 9142 0.66 0.803245
Target:  5'- uGCGG-CaCGCGGGCGCGGcgccgcccgcgccGGGGGG-Ca -3'
miRNA:   3'- uUGUCuG-GCGCCUGUGCC-------------UCCCUCaG- -5'
5382 3' -58.9 NC_001798.1 + 5912 0.66 0.795295
Target:  5'- aGGCGGGCC-CGGACG-GGGGGcGGGcCg -3'
miRNA:   3'- -UUGUCUGGcGCCUGUgCCUCC-CUCaG- -5'
5382 3' -58.9 NC_001798.1 + 27143 0.66 0.795295
Target:  5'- --aAGGCaCG-GGGCGCgGGAGGGAGg- -3'
miRNA:   3'- uugUCUG-GCgCCUGUG-CCUCCCUCag -5'
5382 3' -58.9 NC_001798.1 + 96035 0.66 0.795295
Target:  5'- gGGCGGGCgGgCGGGCgACGGgcauaaagaGGGGAuGUCa -3'
miRNA:   3'- -UUGUCUGgC-GCCUG-UGCC---------UCCCU-CAG- -5'
5382 3' -58.9 NC_001798.1 + 102197 0.66 0.795295
Target:  5'- aAGCcuGGCgCGCGG-CGCGccGGGAGUCg -3'
miRNA:   3'- -UUGu-CUG-GCGCCuGUGCcuCCCUCAG- -5'
5382 3' -58.9 NC_001798.1 + 149985 0.66 0.786326
Target:  5'- cGCGGcgcCCGCGGACGCcGGGGcGAG-Cg -3'
miRNA:   3'- uUGUCu--GGCGCCUGUGcCUCC-CUCaG- -5'
5382 3' -58.9 NC_001798.1 + 17966 0.66 0.786326
Target:  5'- cGCAGGUC-CGGACGuCGGGGGGGGc- -3'
miRNA:   3'- uUGUCUGGcGCCUGU-GCCUCCCUCag -5'
5382 3' -58.9 NC_001798.1 + 151279 0.66 0.786326
Target:  5'- cGCAcGGCCGCcucGGccuccACGCGGGuccGGGGGUCg -3'
miRNA:   3'- uUGU-CUGGCG---CC-----UGUGCCU---CCCUCAG- -5'
5382 3' -58.9 NC_001798.1 + 30034 0.66 0.783608
Target:  5'- aGGCAGggaggagcccgagaGCgGgGGACAgGGGGGGAGa- -3'
miRNA:   3'- -UUGUC--------------UGgCgCCUGUgCCUCCCUCag -5'
5382 3' -58.9 NC_001798.1 + 58983 0.66 0.777222
Target:  5'- cGGCGG-CCGgGcGaACGCGGGGGGGG-Cg -3'
miRNA:   3'- -UUGUCuGGCgC-C-UGUGCCUCCCUCaG- -5'
5382 3' -58.9 NC_001798.1 + 150857 0.66 0.767992
Target:  5'- -uCGGgucGCgGCGGGCugGGAGGuuccgcGGGUCg -3'
miRNA:   3'- uuGUC---UGgCGCCUGugCCUCC------CUCAG- -5'
5382 3' -58.9 NC_001798.1 + 15884 0.66 0.758645
Target:  5'- cGCAGggcgcgucgaaACCGCGGGCGgGGuGGGAa-- -3'
miRNA:   3'- uUGUC-----------UGGCGCCUGUgCCuCCCUcag -5'
5382 3' -58.9 NC_001798.1 + 6231 0.66 0.758645
Target:  5'- gGGCcGGCCGgGGGgACGGGcGGGGGa- -3'
miRNA:   3'- -UUGuCUGGCgCCUgUGCCU-CCCUCag -5'
5382 3' -58.9 NC_001798.1 + 153991 0.66 0.75582
Target:  5'- ---cGACCGCGGuucccgagucguacGCAgGGAccauuuGGGAGUCu -3'
miRNA:   3'- uuguCUGGCGCC--------------UGUgCCU------CCCUCAG- -5'
5382 3' -58.9 NC_001798.1 + 36269 0.67 0.74919
Target:  5'- --uGGACCccgggGUGGGCgGCGGGGGGGGg- -3'
miRNA:   3'- uugUCUGG-----CGCCUG-UGCCUCCCUCag -5'
5382 3' -58.9 NC_001798.1 + 149742 0.67 0.74919
Target:  5'- cGCAGcAgCGCGGGgGCcGAGGGAGg- -3'
miRNA:   3'- uUGUC-UgGCGCCUgUGcCUCCCUCag -5'
5382 3' -58.9 NC_001798.1 + 58697 0.67 0.74919
Target:  5'- --aGGGCCGCGGcgGCGCGGGGGucGaUCc -3'
miRNA:   3'- uugUCUGGCGCC--UGUGCCUCCcuC-AG- -5'
5382 3' -58.9 NC_001798.1 + 135794 0.67 0.74919
Target:  5'- gAGgAGGCCGUGuGCGCGGcccGGGGcGUCa -3'
miRNA:   3'- -UUgUCUGGCGCcUGUGCC---UCCCuCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.