miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5382 5' -60.5 NC_001798.1 + 127745 0.66 0.749518
Target:  5'- cGGcCGCCGCaacacccgGCG-CCAaGCGCCCc -3'
miRNA:   3'- aCCuGCGGCGa-------CGCaGGUgUGUGGGc -5'
5382 5' -60.5 NC_001798.1 + 22862 0.66 0.749518
Target:  5'- cGGAcCGUCGCccCG-CCGCGCgGCCCGg -3'
miRNA:   3'- aCCU-GCGGCGacGCaGGUGUG-UGGGC- -5'
5382 5' -60.5 NC_001798.1 + 35201 0.66 0.749518
Target:  5'- cGGGC-CC-CUGCGUucguugcugCCGCGCcCCCGg -3'
miRNA:   3'- aCCUGcGGcGACGCA---------GGUGUGuGGGC- -5'
5382 5' -60.5 NC_001798.1 + 146875 0.66 0.749518
Target:  5'- gGGACuCCggagaaggaagGCUGC-UCCGCGCACCgGc -3'
miRNA:   3'- aCCUGcGG-----------CGACGcAGGUGUGUGGgC- -5'
5382 5' -60.5 NC_001798.1 + 73960 0.66 0.749518
Target:  5'- gUGGACG-CGC-GCGgCCGCGgGCuCCGg -3'
miRNA:   3'- -ACCUGCgGCGaCGCaGGUGUgUG-GGC- -5'
5382 5' -60.5 NC_001798.1 + 122358 0.66 0.749518
Target:  5'- cGGugGCgUGggGCGggCgACGCGCCCGc -3'
miRNA:   3'- aCCugCG-GCgaCGCa-GgUGUGUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 36224 0.66 0.748586
Target:  5'- -cGAcCGCCGCcGCGcCCGCGuuucugcCGCCCGc -3'
miRNA:   3'- acCU-GCGGCGaCGCaGGUGU-------GUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 84003 0.66 0.740151
Target:  5'- aGGAucCGCCGCgugcgaacgGCGUCCucgGgGCCCa -3'
miRNA:   3'- aCCU--GCGGCGa--------CGCAGGug-UgUGGGc -5'
5382 5' -60.5 NC_001798.1 + 110696 0.66 0.740151
Target:  5'- gUGucCGCCG-UGCGUCCGCuacCGCCUc -3'
miRNA:   3'- -ACcuGCGGCgACGCAGGUGu--GUGGGc -5'
5382 5' -60.5 NC_001798.1 + 3573 0.66 0.740151
Target:  5'- gGGGCaCgGCccGCG-CCACGCugCCGg -3'
miRNA:   3'- aCCUGcGgCGa-CGCaGGUGUGugGGC- -5'
5382 5' -60.5 NC_001798.1 + 23680 0.66 0.740151
Target:  5'- cGGugGCCgGCcGCGacgCCACGgGCCg- -3'
miRNA:   3'- aCCugCGG-CGaCGCa--GGUGUgUGGgc -5'
5382 5' -60.5 NC_001798.1 + 149249 0.66 0.740151
Target:  5'- gGGGCGUCGCcggccgGCGcggGCGCGCCCu -3'
miRNA:   3'- aCCUGCGGCGa-----CGCaggUGUGUGGGc -5'
5382 5' -60.5 NC_001798.1 + 154100 0.66 0.740151
Target:  5'- gGGGCGCgGCcgGCG-CCGgGgACCCc -3'
miRNA:   3'- aCCUGCGgCGa-CGCaGGUgUgUGGGc -5'
5382 5' -60.5 NC_001798.1 + 97750 0.66 0.740151
Target:  5'- -aGAUGCUGCgggucaGCGUCCACGgcgaggugcUGCCCGc -3'
miRNA:   3'- acCUGCGGCGa-----CGCAGGUGU---------GUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 26400 0.66 0.730695
Target:  5'- cGGGCGCUGCUcgaGCccgacggCgACGCGCCCc -3'
miRNA:   3'- aCCUGCGGCGA---CGca-----GgUGUGUGGGc -5'
5382 5' -60.5 NC_001798.1 + 142524 0.66 0.730695
Target:  5'- cUGGACGuCCGCc-CGaCCACACcCCCc -3'
miRNA:   3'- -ACCUGC-GGCGacGCaGGUGUGuGGGc -5'
5382 5' -60.5 NC_001798.1 + 79387 0.66 0.730695
Target:  5'- cGGGCGCgggCGCggaGUCCGCgcccGCGCCCc -3'
miRNA:   3'- aCCUGCG---GCGacgCAGGUG----UGUGGGc -5'
5382 5' -60.5 NC_001798.1 + 124259 0.66 0.72116
Target:  5'- gUGGACGCgGUuauccUGCGgcaggcgacCCGC-CGCCCGc -3'
miRNA:   3'- -ACCUGCGgCG-----ACGCa--------GGUGuGUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 124512 0.66 0.72116
Target:  5'- gGGGgGCUGCgggcgUGuCGUCC-CACACUCGc -3'
miRNA:   3'- aCCUgCGGCG-----AC-GCAGGuGUGUGGGC- -5'
5382 5' -60.5 NC_001798.1 + 77409 0.66 0.72116
Target:  5'- cGGcCGCCGacCUGguaGUCCAgGCGCgCCGg -3'
miRNA:   3'- aCCuGCGGC--GACg--CAGGUgUGUG-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.