miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5392 5' -51 NC_001798.1 + 129019 0.66 0.996163
Target:  5'- cCGCcgGCGAaaaaagGCGAUGCU--CCgCCCCg -3'
miRNA:   3'- -GCGa-UGCUa-----UGCUAUGGuuGGaGGGG- -5'
5392 5' -51 NC_001798.1 + 118495 0.66 0.996163
Target:  5'- gGUUGCGuUGCGcuuuCCGGcCCUCCCg -3'
miRNA:   3'- gCGAUGCuAUGCuau-GGUU-GGAGGGg -5'
5392 5' -51 NC_001798.1 + 95684 0.66 0.996163
Target:  5'- gGCgGCGGcgGCGGgggcgGCCGGCgUCgCCCg -3'
miRNA:   3'- gCGaUGCUa-UGCUa----UGGUUGgAG-GGG- -5'
5392 5' -51 NC_001798.1 + 118745 0.66 0.996163
Target:  5'- uGUUGCug-GCG-UACCGcagcGCUUCCCCg -3'
miRNA:   3'- gCGAUGcuaUGCuAUGGU----UGGAGGGG- -5'
5392 5' -51 NC_001798.1 + 79671 0.66 0.996163
Target:  5'- gCGCUGCuGAUGCGucccgaGgCGGCCUgcgugcggcCCCCg -3'
miRNA:   3'- -GCGAUG-CUAUGCua----UgGUUGGA---------GGGG- -5'
5392 5' -51 NC_001798.1 + 45820 0.66 0.996163
Target:  5'- aCGCgaggcGCGGUcuaGAUGCCAguggagccaaACC-CCCCg -3'
miRNA:   3'- -GCGa----UGCUAug-CUAUGGU----------UGGaGGGG- -5'
5392 5' -51 NC_001798.1 + 6953 0.66 0.996102
Target:  5'- uGCUGgccccuUGAUACGAUcucgucgACCGgGgCUCCCCu -3'
miRNA:   3'- gCGAU------GCUAUGCUA-------UGGU-UgGAGGGG- -5'
5392 5' -51 NC_001798.1 + 5290 0.66 0.995516
Target:  5'- aGgaGCGAU-CGAcGCCG-CCgcgCCCCg -3'
miRNA:   3'- gCgaUGCUAuGCUaUGGUuGGa--GGGG- -5'
5392 5' -51 NC_001798.1 + 91850 0.66 0.995516
Target:  5'- aGC-ACGccGUACauAUACCGGCCgCCCCg -3'
miRNA:   3'- gCGaUGC--UAUGc-UAUGGUUGGaGGGG- -5'
5392 5' -51 NC_001798.1 + 105049 0.66 0.995516
Target:  5'- --gUGCGGUACcaGGUACCAAagacgaCUCCCg -3'
miRNA:   3'- gcgAUGCUAUG--CUAUGGUUg-----GAGGGg -5'
5392 5' -51 NC_001798.1 + 115523 0.66 0.995516
Target:  5'- gGCgUACGucGCGGccCCGGCCggCCCCg -3'
miRNA:   3'- gCG-AUGCuaUGCUauGGUUGGa-GGGG- -5'
5392 5' -51 NC_001798.1 + 4698 0.66 0.995087
Target:  5'- cCGCgGCGAgACGAcGCCguccgcGgcaggcucgucgacgGCCUCCCCg -3'
miRNA:   3'- -GCGaUGCUaUGCUaUGG------U---------------UGGAGGGG- -5'
5392 5' -51 NC_001798.1 + 123770 0.66 0.99486
Target:  5'- cCGCUGCuGUGCacccuagccuucgGCCAccuggaagcuGCCUCCCCc -3'
miRNA:   3'- -GCGAUGcUAUGcua----------UGGU----------UGGAGGGG- -5'
5392 5' -51 NC_001798.1 + 58889 0.66 0.994783
Target:  5'- cCGgaACccccgGAgGCGc-GCCGGCCUCCCCg -3'
miRNA:   3'- -GCgaUG-----CUaUGCuaUGGUUGGAGGGG- -5'
5392 5' -51 NC_001798.1 + 105160 0.66 0.994783
Target:  5'- uCGUUGCG-UACGAUcUgAACCUCCa- -3'
miRNA:   3'- -GCGAUGCuAUGCUAuGgUUGGAGGgg -5'
5392 5' -51 NC_001798.1 + 127636 0.66 0.994783
Target:  5'- cCGCUGC----UGGUGCUggUCUCCCg -3'
miRNA:   3'- -GCGAUGcuauGCUAUGGuuGGAGGGg -5'
5392 5' -51 NC_001798.1 + 130011 0.66 0.994783
Target:  5'- uCGCcgaACGGUGCuGUacACCGGCUcCCCCg -3'
miRNA:   3'- -GCGa--UGCUAUGcUA--UGGUUGGaGGGG- -5'
5392 5' -51 NC_001798.1 + 50720 0.66 0.993956
Target:  5'- gGuCUGCGuggggACGAgGCCcACCcCCCCa -3'
miRNA:   3'- gC-GAUGCua---UGCUaUGGuUGGaGGGG- -5'
5392 5' -51 NC_001798.1 + 41274 0.66 0.993956
Target:  5'- aCGCUA-GAUACaGAaACCAACCgacgaCCaCCa -3'
miRNA:   3'- -GCGAUgCUAUG-CUaUGGUUGGa----GG-GG- -5'
5392 5' -51 NC_001798.1 + 109108 0.66 0.993026
Target:  5'- gCGCUggACGcccuccgGCGGgugGCCGGCUaCCCCg -3'
miRNA:   3'- -GCGA--UGCua-----UGCUa--UGGUUGGaGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.