miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5393 5' -56.6 NC_001798.1 + 74697 0.66 0.900418
Target:  5'- gGCACccaaACCGCCCCcccgaugaugUGUGGGcagcagcccuGGAGg -3'
miRNA:   3'- -CGUGuuugUGGUGGGG----------ACACCC----------CCUC- -5'
5393 5' -56.6 NC_001798.1 + 30822 0.66 0.900418
Target:  5'- cCGCGGACGgccCCGCgcuCCCUGUcgcugGGGGGAc -3'
miRNA:   3'- cGUGUUUGU---GGUG---GGGACA-----CCCCCUc -5'
5393 5' -56.6 NC_001798.1 + 47841 0.66 0.887246
Target:  5'- cGCGCGcGCuccuCCACCCCcc-GGGGGc- -3'
miRNA:   3'- -CGUGUuUGu---GGUGGGGacaCCCCCuc -5'
5393 5' -56.6 NC_001798.1 + 568 0.66 0.887246
Target:  5'- cGCGCcccguGCcuucccucCCGCUCCUGcGGGGGGGc -3'
miRNA:   3'- -CGUGuu---UGu-------GGUGGGGACaCCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 18201 0.66 0.887246
Target:  5'- aCACAGGCGCgcaGCCUCgccGGGGGAc -3'
miRNA:   3'- cGUGUUUGUGg--UGGGGacaCCCCCUc -5'
5393 5' -56.6 NC_001798.1 + 16159 0.66 0.887246
Target:  5'- gGCAcCGAGCGCCACgggcggCCCgcggGgaccgGGGGGAn -3'
miRNA:   3'- -CGU-GUUUGUGGUG------GGGa---Ca----CCCCCUc -5'
5393 5' -56.6 NC_001798.1 + 154488 0.66 0.886564
Target:  5'- cCGCGGGCGCCGCCCCUccccccgcgcgccGcGGGGc-- -3'
miRNA:   3'- cGUGUUUGUGGUGGGGA-------------CaCCCCcuc -5'
5393 5' -56.6 NC_001798.1 + 150 0.66 0.886564
Target:  5'- cCGCGGGCGCCGCCCCUccccccgcgcgccGcGGGGc-- -3'
miRNA:   3'- cGUGUUUGUGGUGGGGA-------------CaCCCCcuc -5'
5393 5' -56.6 NC_001798.1 + 138918 0.66 0.880324
Target:  5'- gGCGCAAAgcagucUACCACCCC-GUGGGc--- -3'
miRNA:   3'- -CGUGUUU------GUGGUGGGGaCACCCccuc -5'
5393 5' -56.6 NC_001798.1 + 5614 0.66 0.880324
Target:  5'- cCGCGGGCGgcuCCGCCCCaaagGGGGcGGGg -3'
miRNA:   3'- cGUGUUUGU---GGUGGGGaca-CCCC-CUC- -5'
5393 5' -56.6 NC_001798.1 + 31956 0.66 0.880324
Target:  5'- cGCGCu--CGCCccucGCCCCccaggggGUGGGGGc- -3'
miRNA:   3'- -CGUGuuuGUGG----UGGGGa------CACCCCCuc -5'
5393 5' -56.6 NC_001798.1 + 85430 0.66 0.872458
Target:  5'- uGUACAAGCAggccuaccgccucUCGCCCCaGUGGGuGGc- -3'
miRNA:   3'- -CGUGUUUGU-------------GGUGGGGaCACCC-CCuc -5'
5393 5' -56.6 NC_001798.1 + 65672 0.66 0.86583
Target:  5'- gGUACAcGCA-CGCCCCgGUGGGGc-- -3'
miRNA:   3'- -CGUGUuUGUgGUGGGGaCACCCCcuc -5'
5393 5' -56.6 NC_001798.1 + 119732 0.66 0.863582
Target:  5'- cGCACcccaACCACCCaaccaacggacaaaCUGUuguaGGGGGGGa -3'
miRNA:   3'- -CGUGuuugUGGUGGG--------------GACA----CCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 27260 0.67 0.858267
Target:  5'- cGCGgGAcCGCaGCCCCgUGgcgcgcggGGGGGAGg -3'
miRNA:   3'- -CGUgUUuGUGgUGGGG-ACa-------CCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 30475 0.67 0.858267
Target:  5'- cCGCcGACGCgCAgggaUCCUGUGGGGGuGg -3'
miRNA:   3'- cGUGuUUGUG-GUg---GGGACACCCCCuC- -5'
5393 5' -56.6 NC_001798.1 + 124126 0.67 0.858267
Target:  5'- cGCGCuGugGCgCGCCCCcgccGUGGcGGAGg -3'
miRNA:   3'- -CGUGuUugUG-GUGGGGa---CACCcCCUC- -5'
5393 5' -56.6 NC_001798.1 + 98501 0.67 0.853632
Target:  5'- gGCGgGAGCgACgCGCCCCcGUaggcccgccaugcgcGGGGGGGg -3'
miRNA:   3'- -CGUgUUUG-UG-GUGGGGaCA---------------CCCCCUC- -5'
5393 5' -56.6 NC_001798.1 + 6675 0.67 0.850502
Target:  5'- gGC-CGGGCGCCGCCUUcGUGGacGGGAc -3'
miRNA:   3'- -CGuGUUUGUGGUGGGGaCACC--CCCUc -5'
5393 5' -56.6 NC_001798.1 + 69174 0.67 0.850502
Target:  5'- aGCcCGAugGCgGgCCagGUGGGGGAGg -3'
miRNA:   3'- -CGuGUUugUGgUgGGgaCACCCCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.