miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5398 3' -54.2 NC_001798.1 + 83461 0.66 0.962808
Target:  5'- cCCUGCGUuccgugCGGA-UGCGGGUAg----- -3'
miRNA:   3'- -GGACGCG------GCCUcGCGCCCAUauuuug -5'
5398 3' -54.2 NC_001798.1 + 6381 0.66 0.962808
Target:  5'- gCCgggGgGCCGGGGgGCcGGGgggccgggGGGACg -3'
miRNA:   3'- -GGa--CgCGGCCUCgCG-CCCaua-----UUUUG- -5'
5398 3' -54.2 NC_001798.1 + 24819 0.66 0.962808
Target:  5'- gCCUGCGCgGGGaccuGCGCGuGGccgGcgGCa -3'
miRNA:   3'- -GGACGCGgCCU----CGCGC-CCauaUuuUG- -5'
5398 3' -54.2 NC_001798.1 + 49395 0.66 0.962808
Target:  5'- uCCgcgGUgaGCUGcGGGCGCGGGaggAGAGCu -3'
miRNA:   3'- -GGa--CG--CGGC-CUCGCGCCCauaUUUUG- -5'
5398 3' -54.2 NC_001798.1 + 122429 0.66 0.962808
Target:  5'- gCCUGUGCCGccGAGCGCGucGUGc----- -3'
miRNA:   3'- -GGACGCGGC--CUCGCGCc-CAUauuuug -5'
5398 3' -54.2 NC_001798.1 + 146277 0.66 0.962808
Target:  5'- aCC-GCaGCCGGAGaggccgaGCGGGgaguGGGCg -3'
miRNA:   3'- -GGaCG-CGGCCUCg------CGCCCauauUUUG- -5'
5398 3' -54.2 NC_001798.1 + 29536 0.66 0.95926
Target:  5'- gCCccCGCCGGGGCGCGcGGcUAUugggGGAAUc -3'
miRNA:   3'- -GGacGCGGCCUCGCGC-CC-AUA----UUUUG- -5'
5398 3' -54.2 NC_001798.1 + 101013 0.66 0.95926
Target:  5'- --gGCGCggaGGGGgGCGGGUuu--GACg -3'
miRNA:   3'- ggaCGCGg--CCUCgCGCCCAuauuUUG- -5'
5398 3' -54.2 NC_001798.1 + 1528 0.66 0.95926
Target:  5'- uCCaGCGCCGGgagcacGGCGCGgcGGUAcucgcgcgGGGACa -3'
miRNA:   3'- -GGaCGCGGCC------UCGCGC--CCAUa-------UUUUG- -5'
5398 3' -54.2 NC_001798.1 + 22144 0.66 0.95926
Target:  5'- gCCggcggGgGCCaacgGGAGCGCGGGgcc--GGCa -3'
miRNA:   3'- -GGa----CgCGG----CCUCGCGCCCauauuUUG- -5'
5398 3' -54.2 NC_001798.1 + 109879 0.66 0.95926
Target:  5'- cCCUGCGCUucgaucucgccGAGgGCGGGUucauccuGGACg -3'
miRNA:   3'- -GGACGCGGc----------CUCgCGCCCAuau----UUUG- -5'
5398 3' -54.2 NC_001798.1 + 128439 0.66 0.95926
Target:  5'- gCUGCGgUGGGGCGCgcaGGGUccgu-GCu -3'
miRNA:   3'- gGACGCgGCCUCGCG---CCCAuauuuUG- -5'
5398 3' -54.2 NC_001798.1 + 150423 0.66 0.95926
Target:  5'- --gGCGgCGGcGGCGCGGGgc--GGACu -3'
miRNA:   3'- ggaCGCgGCC-UCGCGCCCauauUUUG- -5'
5398 3' -54.2 NC_001798.1 + 46679 0.66 0.95926
Target:  5'- cCCgGgGCCGGAuacCGCGGGggcGUGAAu- -3'
miRNA:   3'- -GGaCgCGGCCUc--GCGCCCa--UAUUUug -5'
5398 3' -54.2 NC_001798.1 + 146512 0.66 0.95926
Target:  5'- cCCcGCGCCGGc-CGCGGcGgagAGAACc -3'
miRNA:   3'- -GGaCGCGGCCucGCGCC-CauaUUUUG- -5'
5398 3' -54.2 NC_001798.1 + 39804 0.66 0.955486
Target:  5'- aCCacaCGCCGGuGGuCGCGGGUGgcGGAUc -3'
miRNA:   3'- -GGac-GCGGCC-UC-GCGCCCAUauUUUG- -5'
5398 3' -54.2 NC_001798.1 + 37220 0.66 0.95148
Target:  5'- --gGCGCCGGAGCuuuggcccagGgGGGUuguuugugGAGACc -3'
miRNA:   3'- ggaCGCGGCCUCG----------CgCCCAua------UUUUG- -5'
5398 3' -54.2 NC_001798.1 + 79499 0.66 0.95148
Target:  5'- gCUGCgccGCCGGGGCGaGGcGUAUcu-GCg -3'
miRNA:   3'- gGACG---CGGCCUCGCgCC-CAUAuuuUG- -5'
5398 3' -54.2 NC_001798.1 + 147222 0.66 0.95148
Target:  5'- gCCccCGgCGGAGCGCGGGggccccGGGGCc -3'
miRNA:   3'- -GGacGCgGCCUCGCGCCCaua---UUUUG- -5'
5398 3' -54.2 NC_001798.1 + 63259 0.66 0.95148
Target:  5'- gCUgGCGUCGGGG-GCGGGggcGGAAUa -3'
miRNA:   3'- gGA-CGCGGCCUCgCGCCCauaUUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.