miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5398 5' -60 NC_001798.1 + 133935 0.66 0.785944
Target:  5'- cGGGcGUCGUGG-CAUGgaagCCCCCGgCa -3'
miRNA:   3'- -CCCaCGGUACCuGUGUa---GGGGGCgGc -5'
5398 5' -60 NC_001798.1 + 91814 0.66 0.785944
Target:  5'- uGGG-GaCCGUGGGCGgGgCCCgaCGCCGc -3'
miRNA:   3'- -CCCaC-GGUACCUGUgUaGGGg-GCGGC- -5'
5398 5' -60 NC_001798.1 + 60027 0.66 0.785944
Target:  5'- uGGGgacgucgGCCGUgaGGAagaACuugagggucCCCCCGCCGa -3'
miRNA:   3'- -CCCa------CGGUA--CCUg--UGua-------GGGGGCGGC- -5'
5398 5' -60 NC_001798.1 + 69301 0.66 0.785944
Target:  5'- gGGGcGCCggGGACGguCAgcccUCCCgCgCGCCGg -3'
miRNA:   3'- -CCCaCGGuaCCUGU--GU----AGGG-G-GCGGC- -5'
5398 5' -60 NC_001798.1 + 26437 0.66 0.785944
Target:  5'- uGGUGCUgcgcgacgacGcGGACGCGggcccgCCCCCGCa- -3'
miRNA:   3'- cCCACGG----------UaCCUGUGUa-----GGGGGCGgc -5'
5398 5' -60 NC_001798.1 + 7437 0.66 0.785944
Target:  5'- cGGGUGCCcagGGAgccuagaccccCACGggaaCCCCGCg- -3'
miRNA:   3'- -CCCACGGua-CCU-----------GUGUag--GGGGCGgc -5'
5398 5' -60 NC_001798.1 + 87721 0.66 0.777011
Target:  5'- ---cGCCGUa-GCGCcggCCCCCGCCGg -3'
miRNA:   3'- cccaCGGUAccUGUGua-GGGGGCGGC- -5'
5398 5' -60 NC_001798.1 + 111785 0.66 0.777011
Target:  5'- cGGGUGcCCGUGaucACgACAUCCgUgCGCCGg -3'
miRNA:   3'- -CCCAC-GGUACc--UG-UGUAGG-GgGCGGC- -5'
5398 5' -60 NC_001798.1 + 135334 0.66 0.777011
Target:  5'- uGGUGCC--GGACGCGUgcgacgccugCCCCgCGCUc -3'
miRNA:   3'- cCCACGGuaCCUGUGUA----------GGGG-GCGGc -5'
5398 5' -60 NC_001798.1 + 52623 0.66 0.767957
Target:  5'- cGGGUcgacgGCCcccgagGUGGGCACGUacaccCCCCUGCg- -3'
miRNA:   3'- -CCCA-----CGG------UACCUGUGUA-----GGGGGCGgc -5'
5398 5' -60 NC_001798.1 + 72568 0.66 0.767957
Target:  5'- ---cGCCAagcgcgcgcUGGuCGCGUCCCUCGCgGg -3'
miRNA:   3'- cccaCGGU---------ACCuGUGUAGGGGGCGgC- -5'
5398 5' -60 NC_001798.1 + 98575 0.66 0.767957
Target:  5'- uGGUgGCCGcGGugGCGUCggcggCCCCGgCGg -3'
miRNA:   3'- cCCA-CGGUaCCugUGUAG-----GGGGCgGC- -5'
5398 5' -60 NC_001798.1 + 121402 0.66 0.767957
Target:  5'- cGGaUGCgGUGGGgGCGauccuagCCCCCGUCa -3'
miRNA:   3'- cCC-ACGgUACCUgUGUa------GGGGGCGGc -5'
5398 5' -60 NC_001798.1 + 123894 0.66 0.767957
Target:  5'- uGGUacCCAcGGACACggCCCCCGaauCCGg -3'
miRNA:   3'- cCCAc-GGUaCCUGUGuaGGGGGC---GGC- -5'
5398 5' -60 NC_001798.1 + 134473 0.66 0.767957
Target:  5'- cGGuUGgCGUGGGCGCG-CCUggCCGCCa -3'
miRNA:   3'- cCC-ACgGUACCUGUGUaGGG--GGCGGc -5'
5398 5' -60 NC_001798.1 + 130019 0.66 0.767957
Target:  5'- cGGUGCUGU--ACACcggcUCCCCCGCgGa -3'
miRNA:   3'- cCCACGGUAccUGUGu---AGGGGGCGgC- -5'
5398 5' -60 NC_001798.1 + 25342 0.66 0.767045
Target:  5'- cGG-GCCGUGGccgagcuCACGgaccacccgcucuUCCCCgCGCCGu -3'
miRNA:   3'- cCCaCGGUACCu------GUGU-------------AGGGG-GCGGC- -5'
5398 5' -60 NC_001798.1 + 113813 0.66 0.749518
Target:  5'- uGGGUGCUcggGGACAgAggaCgCCgGCCGg -3'
miRNA:   3'- -CCCACGGua-CCUGUgUa--GgGGgCGGC- -5'
5398 5' -60 NC_001798.1 + 59711 0.66 0.749518
Target:  5'- cGGGcGCU-UGGugGCGUCgUCCGCgGg -3'
miRNA:   3'- -CCCaCGGuACCugUGUAGgGGGCGgC- -5'
5398 5' -60 NC_001798.1 + 39551 0.66 0.749518
Target:  5'- uGGGUGgCGccgGGGC-CGUCCguCCgCGCCGa -3'
miRNA:   3'- -CCCACgGUa--CCUGuGUAGG--GG-GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.