miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5405 3' -61.3 NC_001798.1 + 21039 0.66 0.700427
Target:  5'- cGGCGcCCGGCCugcgagaaaGCGCGgauguuggGAucggggccccgucccCCCGGCCCg -3'
miRNA:   3'- -CUGC-GGCCGG---------UGUGU--------UU---------------GGGCCGGGa -5'
5405 3' -61.3 NC_001798.1 + 51471 0.66 0.696532
Target:  5'- -uCGCgGGCCGCGuguCGGGCCCGGagCUg -3'
miRNA:   3'- cuGCGgCCGGUGU---GUUUGGGCCggGA- -5'
5405 3' -61.3 NC_001798.1 + 56638 0.66 0.696532
Target:  5'- --aGCCGGCCGUGCAGACCgCauggucGCCCg -3'
miRNA:   3'- cugCGGCCGGUGUGUUUGG-Gc-----CGGGa -5'
5405 3' -61.3 NC_001798.1 + 68942 0.66 0.696532
Target:  5'- --gGuCCaGCCGCGC---CCCGGCCCg -3'
miRNA:   3'- cugC-GGcCGGUGUGuuuGGGCCGGGa -5'
5405 3' -61.3 NC_001798.1 + 74928 0.66 0.696532
Target:  5'- -cCGCCGGCC-CACcuGGACCCcaccGUCCa -3'
miRNA:   3'- cuGCGGCCGGuGUG--UUUGGGc---CGGGa -5'
5405 3' -61.3 NC_001798.1 + 93322 0.66 0.696532
Target:  5'- gGGCGCCauGGUguucaGCACcAAUUCGGCCCUc -3'
miRNA:   3'- -CUGCGG--CCGg----UGUGuUUGGGCCGGGA- -5'
5405 3' -61.3 NC_001798.1 + 23057 0.66 0.696532
Target:  5'- cGAgGCCGuuCGCACGAuCCCGucGCCCc -3'
miRNA:   3'- -CUgCGGCcgGUGUGUUuGGGC--CGGGa -5'
5405 3' -61.3 NC_001798.1 + 70865 0.66 0.695557
Target:  5'- cGACGCCGcCCugACcc-CCCucacgcgGGCCCUg -3'
miRNA:   3'- -CUGCGGCcGGugUGuuuGGG-------CCGGGA- -5'
5405 3' -61.3 NC_001798.1 + 69302 0.66 0.690675
Target:  5'- gGGCGCCGGggacggucagcccucCCGCGC--GCCgGGCUCc -3'
miRNA:   3'- -CUGCGGCC---------------GGUGUGuuUGGgCCGGGa -5'
5405 3' -61.3 NC_001798.1 + 75548 0.66 0.686761
Target:  5'- cGCGCaUGaGCCugGCGGACguggccgcccaCCGGCCCc -3'
miRNA:   3'- cUGCG-GC-CGGugUGUUUG-----------GGCCGGGa -5'
5405 3' -61.3 NC_001798.1 + 98569 0.66 0.686761
Target:  5'- gGGCGCUgguGGCCGCGguGGCgucggCGGCCCc -3'
miRNA:   3'- -CUGCGG---CCGGUGUguUUGg----GCCGGGa -5'
5405 3' -61.3 NC_001798.1 + 135055 0.66 0.686761
Target:  5'- aGGCgGCCGGCCGC-CuccuGCCC-GCCUUu -3'
miRNA:   3'- -CUG-CGGCCGGUGuGuu--UGGGcCGGGA- -5'
5405 3' -61.3 NC_001798.1 + 141035 0.66 0.686761
Target:  5'- aGCGCCccGGCCuggACGCGacccagagGACCCuGGCCUa -3'
miRNA:   3'- cUGCGG--CCGG---UGUGU--------UUGGG-CCGGGa -5'
5405 3' -61.3 NC_001798.1 + 1318 0.66 0.686761
Target:  5'- aGCGCCcGCgCGCAgAAcucccGCCgCGGCCCg -3'
miRNA:   3'- cUGCGGcCG-GUGUgUU-----UGG-GCCGGGa -5'
5405 3' -61.3 NC_001798.1 + 73727 0.66 0.686761
Target:  5'- gGGCG-CGGCaCACAUGAuUCCGGCCg- -3'
miRNA:   3'- -CUGCgGCCG-GUGUGUUuGGGCCGGga -5'
5405 3' -61.3 NC_001798.1 + 14005 0.66 0.680877
Target:  5'- gGAuCGCCGGauuauuucguccuucCCGCACAAcccauGCCCGGCa-- -3'
miRNA:   3'- -CU-GCGGCC---------------GGUGUGUU-----UGGGCCGgga -5'
5405 3' -61.3 NC_001798.1 + 22843 0.66 0.676947
Target:  5'- -cCGCCGcCCACccCGAACCCGGaCCg -3'
miRNA:   3'- cuGCGGCcGGUGu-GUUUGGGCCgGGa -5'
5405 3' -61.3 NC_001798.1 + 17084 0.66 0.676947
Target:  5'- cACGCCGgucggguccacGCCGgACGAuuguuCCCGGCCg- -3'
miRNA:   3'- cUGCGGC-----------CGGUgUGUUu----GGGCCGGga -5'
5405 3' -61.3 NC_001798.1 + 106087 0.66 0.676947
Target:  5'- -cUGgCGGUCGCGgcGACCCGGCgCCg -3'
miRNA:   3'- cuGCgGCCGGUGUguUUGGGCCG-GGa -5'
5405 3' -61.3 NC_001798.1 + 73346 0.66 0.676947
Target:  5'- cGCGCCcggcgGGCCGCgagACGGuCCCuuGGCCCa -3'
miRNA:   3'- cUGCGG-----CCGGUG---UGUUuGGG--CCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.