miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 3' -58.9 NC_001798.1 + 116939 0.66 0.822071
Target:  5'- aCGCGCUguuUGCGGGCGccgacCACGUGGC-Ca -3'
miRNA:   3'- -GCGCGG---GCGCUUGUu----GUGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 103287 0.66 0.822071
Target:  5'- gCGgGUCCGCGGcgcucaaaaauaGCGgcGCugGCGGCcgUCUc -3'
miRNA:   3'- -GCgCGGGCGCU------------UGU--UGugCGCCG--AGA- -5'
5406 3' -58.9 NC_001798.1 + 109533 0.66 0.822071
Target:  5'- gGCGUUCGUguuGGACAGCccCGCGGC-CUa -3'
miRNA:   3'- gCGCGGGCG---CUUGUUGu-GCGCCGaGA- -5'
5406 3' -58.9 NC_001798.1 + 4215 0.66 0.822071
Target:  5'- gGCGCUgGCGGGgGcGCGgGCGGCgUCg -3'
miRNA:   3'- gCGCGGgCGCUUgU-UGUgCGCCG-AGa -5'
5406 3' -58.9 NC_001798.1 + 9569 0.66 0.822071
Target:  5'- aGCGCCUGCGccAGCAGgucaugcacgccCACGCGGaCa-- -3'
miRNA:   3'- gCGCGGGCGC--UUGUU------------GUGCGCC-Gaga -5'
5406 3' -58.9 NC_001798.1 + 25533 0.66 0.822071
Target:  5'- gGUGCCCGacccggaGGACGuGCGCGUGGUgauccUCUa -3'
miRNA:   3'- gCGCGGGCg------CUUGU-UGUGCGCCG-----AGA- -5'
5406 3' -58.9 NC_001798.1 + 34565 0.66 0.822071
Target:  5'- uGgGUCCcccgGCGGACGGCucACGCGGCg-- -3'
miRNA:   3'- gCgCGGG----CGCUUGUUG--UGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 149731 0.66 0.822071
Target:  5'- gGCcCCCGCGGcGCAGCAgCGCGGg--- -3'
miRNA:   3'- gCGcGGGCGCU-UGUUGU-GCGCCgaga -5'
5406 3' -58.9 NC_001798.1 + 31478 0.66 0.822071
Target:  5'- cCGC-CCCGCGGGCccCGgGCcGCUCUc -3'
miRNA:   3'- -GCGcGGGCGCUUGuuGUgCGcCGAGA- -5'
5406 3' -58.9 NC_001798.1 + 97449 0.66 0.822071
Target:  5'- gCGCuGCgCCGCGuGCug-GCGCGGCUg- -3'
miRNA:   3'- -GCG-CG-GGCGCuUGuugUGCGCCGAga -5'
5406 3' -58.9 NC_001798.1 + 145976 0.66 0.822071
Target:  5'- cCGCGCCCGCagccuccGGCAGCACGCc----- -3'
miRNA:   3'- -GCGCGGGCGc------UUGUUGUGCGccgaga -5'
5406 3' -58.9 NC_001798.1 + 98918 0.66 0.819559
Target:  5'- aCGCGCCCGgagGGGCAgaacuacacggaggGCAuCGCGGUggUCUu -3'
miRNA:   3'- -GCGCGGGCg--CUUGU--------------UGU-GCGCCG--AGA- -5'
5406 3' -58.9 NC_001798.1 + 147102 0.66 0.814491
Target:  5'- gCGCGUUCGCGAAaGGCGCGaaaggggcccccggaGGCUUUu -3'
miRNA:   3'- -GCGCGGGCGCUUgUUGUGCg--------------CCGAGA- -5'
5406 3' -58.9 NC_001798.1 + 142159 0.66 0.813641
Target:  5'- aCGUGUuuGagucagGGAC-GCGCGCGGUUCUg -3'
miRNA:   3'- -GCGCGggCg-----CUUGuUGUGCGCCGAGA- -5'
5406 3' -58.9 NC_001798.1 + 136810 0.66 0.813641
Target:  5'- aCGCGCUCGaaGGGaGACGCGUGGCg-- -3'
miRNA:   3'- -GCGCGGGCg-CUUgUUGUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 134064 0.66 0.813641
Target:  5'- uCGCGaCgCCGCGGGgGaggcGCGCGCGcGCUUc -3'
miRNA:   3'- -GCGC-G-GGCGCUUgU----UGUGCGC-CGAGa -5'
5406 3' -58.9 NC_001798.1 + 69009 0.66 0.813641
Target:  5'- gGCGUCgCGCGcaucguaggcGGCGgcGCACGCGGC-Ca -3'
miRNA:   3'- gCGCGG-GCGC----------UUGU--UGUGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 43101 0.66 0.813641
Target:  5'- cCGCGUCCGCGAccACGGuCGCuucCGGCg-- -3'
miRNA:   3'- -GCGCGGGCGCU--UGUU-GUGc--GCCGaga -5'
5406 3' -58.9 NC_001798.1 + 29650 0.66 0.813641
Target:  5'- cCG-GCaCUGCGAGCGACGgaGCGGCg-- -3'
miRNA:   3'- -GCgCG-GGCGCUUGUUGUg-CGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 27840 0.66 0.813641
Target:  5'- gCGUGCCgaGUGAACucucccgccccGACGCGCuccGGCUCc -3'
miRNA:   3'- -GCGCGGg-CGCUUG-----------UUGUGCG---CCGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.