miRNA display CGI


Results 21 - 40 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 3' -58.9 NC_001798.1 + 143129 0.71 0.505431
Target:  5'- cCGCGCuuGCGcu-GGCGCGCGGC-Cg -3'
miRNA:   3'- -GCGCGggCGCuugUUGUGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 142694 0.69 0.623023
Target:  5'- -cCGCCCGCuuGCAuauucccuuGCGCGCGGCg-- -3'
miRNA:   3'- gcGCGGGCGcuUGU---------UGUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 142159 0.66 0.813641
Target:  5'- aCGUGUuuGagucagGGAC-GCGCGCGGUUCUg -3'
miRNA:   3'- -GCGCGggCg-----CUUGuUGUGCGCCGAGA- -5'
5406 3' -58.9 NC_001798.1 + 141563 0.66 0.78744
Target:  5'- uCGCGUUCGCGGAgGAgcUGCGGCg-- -3'
miRNA:   3'- -GCGCGGGCGCUUgUUguGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 139335 0.68 0.672928
Target:  5'- gGCGCCCGCGcGCGcUGUGCGGC-Ca -3'
miRNA:   3'- gCGCGGGCGCuUGUuGUGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 138738 0.7 0.543847
Target:  5'- gCGCGCuCCGCGGccccgGCGAC-CGUGGCcagCUg -3'
miRNA:   3'- -GCGCG-GGCGCU-----UGUUGuGCGCCGa--GA- -5'
5406 3' -58.9 NC_001798.1 + 138156 0.68 0.712324
Target:  5'- uCGCGCCCcCGGguccugggggcGCGACcCGCGGC-Cg -3'
miRNA:   3'- -GCGCGGGcGCU-----------UGUUGuGCGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 137631 0.66 0.796318
Target:  5'- gCGCGCCCGCucGGGgGGCGCGaaGCa-- -3'
miRNA:   3'- -GCGCGGGCG--CUUgUUGUGCgcCGaga -5'
5406 3' -58.9 NC_001798.1 + 136810 0.66 0.813641
Target:  5'- aCGCGCUCGaaGGGaGACGCGUGGCg-- -3'
miRNA:   3'- -GCGCGGGCg-CUUgUUGUGCGCCGaga -5'
5406 3' -58.9 NC_001798.1 + 135022 0.69 0.653006
Target:  5'- uGCcCCCGCGGGCAugGC-CGGC-Cg -3'
miRNA:   3'- gCGcGGGCGCUUGUugUGcGCCGaGa -5'
5406 3' -58.9 NC_001798.1 + 134657 0.69 0.653006
Target:  5'- uGCGgcCCCGCGGACAcccGCA-GCGGgUCa -3'
miRNA:   3'- gCGC--GGGCGCUUGU---UGUgCGCCgAGa -5'
5406 3' -58.9 NC_001798.1 + 134446 0.7 0.553606
Target:  5'- gCGCGCgUCGcCGAGCAccccgGCGCGCGGUUg- -3'
miRNA:   3'- -GCGCG-GGC-GCUUGU-----UGUGCGCCGAga -5'
5406 3' -58.9 NC_001798.1 + 134064 0.66 0.813641
Target:  5'- uCGCGaCgCCGCGGGgGaggcGCGCGCGcGCUUc -3'
miRNA:   3'- -GCGC-G-GGCGCUUgU----UGUGCGC-CGAGa -5'
5406 3' -58.9 NC_001798.1 + 133753 0.7 0.573273
Target:  5'- gCGCGCCCGCGug-GGgGCGCuGCUUg -3'
miRNA:   3'- -GCGCGGGCGCuugUUgUGCGcCGAGa -5'
5406 3' -58.9 NC_001798.1 + 133672 0.67 0.759107
Target:  5'- aGCGCCUGcCGGACGcacagacagcuguACGCGCuGCUg- -3'
miRNA:   3'- gCGCGGGC-GCUUGU-------------UGUGCGcCGAga -5'
5406 3' -58.9 NC_001798.1 + 133046 0.69 0.643017
Target:  5'- uCGCGCUcaugCGCGGccucaACAgccuggucggccGCACGCGGUUCa -3'
miRNA:   3'- -GCGCGG----GCGCU-----UGU------------UGUGCGCCGAGa -5'
5406 3' -58.9 NC_001798.1 + 131960 0.66 0.812789
Target:  5'- aCGUGCCCGCGGaucaucgccauggACGccaccgccaACGCGCaGCUg- -3'
miRNA:   3'- -GCGCGGGCGCU-------------UGU---------UGUGCGcCGAga -5'
5406 3' -58.9 NC_001798.1 + 131339 0.7 0.573273
Target:  5'- cCGCGCCC-CGGgcGCGACgucggcgcccgGCGCGGcCUCg -3'
miRNA:   3'- -GCGCGGGcGCU--UGUUG-----------UGCGCC-GAGa -5'
5406 3' -58.9 NC_001798.1 + 129350 0.66 0.796318
Target:  5'- aGCGCCCGcCGGGC--CugGCGGggCc -3'
miRNA:   3'- gCGCGGGC-GCUUGuuGugCGCCgaGa -5'
5406 3' -58.9 NC_001798.1 + 126744 0.71 0.534145
Target:  5'- gCGCGgCCGCacccACGACAucCGCGGCUUUa -3'
miRNA:   3'- -GCGCgGGCGcu--UGUUGU--GCGCCGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.