miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5406 5' -55 NC_001798.1 + 146079 0.65 0.947777
Target:  5'- gGGAGGggUCCGGGGcGaggCGgGCGGGCGAa -3'
miRNA:   3'- -CCUUU--GGGUUCC-Ca--GUgCGCCCGUUg -5'
5406 5' -55 NC_001798.1 + 105723 0.65 0.947777
Target:  5'- cGAcACCCAGGGGcuguugUCGgGUGGGUg-- -3'
miRNA:   3'- cCUuUGGGUUCCC------AGUgCGCCCGuug -5'
5406 5' -55 NC_001798.1 + 3467 0.65 0.947777
Target:  5'- aGGAAGCCCuucug-CGCGCGGucGUAGCg -3'
miRNA:   3'- -CCUUUGGGuucccaGUGCGCC--CGUUG- -5'
5406 5' -55 NC_001798.1 + 14959 0.65 0.947777
Target:  5'- uGggGCCCGAGGcauGUCcuuaGCGGG-AGCu -3'
miRNA:   3'- cCuuUGGGUUCC---CAGug--CGCCCgUUG- -5'
5406 5' -55 NC_001798.1 + 136807 0.65 0.947777
Target:  5'- cGGAcgcGCUCgAAGGGagACGCGuGGCGGg -3'
miRNA:   3'- -CCUu--UGGG-UUCCCagUGCGC-CCGUUg -5'
5406 5' -55 NC_001798.1 + 28887 0.66 0.943352
Target:  5'- cGGAGCuCCGAaGGUCuGCGCGaGGCcGCu -3'
miRNA:   3'- cCUUUG-GGUUcCCAG-UGCGC-CCGuUG- -5'
5406 5' -55 NC_001798.1 + 83779 0.66 0.943352
Target:  5'- aGAAGCgCCGGGGGgcccggACGCGGGgcccggaaCAACu -3'
miRNA:   3'- cCUUUG-GGUUCCCag----UGCGCCC--------GUUG- -5'
5406 5' -55 NC_001798.1 + 74873 0.66 0.943352
Target:  5'- gGGcAGugCCGGuGGGUCGCcacCGGGCGc- -3'
miRNA:   3'- -CC-UUugGGUU-CCCAGUGc--GCCCGUug -5'
5406 5' -55 NC_001798.1 + 22149 0.66 0.943352
Target:  5'- cGGggGCCaacGGGa-GCGCGGGgcCGGCa -3'
miRNA:   3'- -CCuuUGGguuCCCagUGCGCCC--GUUG- -5'
5406 5' -55 NC_001798.1 + 11428 0.66 0.943352
Target:  5'- aGGAAacGCCCccGGGGUuguaaaucuggcCGCGgGGGCGc- -3'
miRNA:   3'- -CCUU--UGGGu-UCCCA------------GUGCgCCCGUug -5'
5406 5' -55 NC_001798.1 + 69508 0.66 0.941979
Target:  5'- aGGAcGCgCCGgagcGGGGcguggcccgcgagcUCGCGCGGGCu-- -3'
miRNA:   3'- -CCUuUG-GGU----UCCC--------------AGUGCGCCCGuug -5'
5406 5' -55 NC_001798.1 + 22256 0.66 0.940584
Target:  5'- cGGAAgccGCCCGcgccGGGcgcuaaugagaugcCGCGCGGGCGGa -3'
miRNA:   3'- -CCUU---UGGGUu---CCCa-------------GUGCGCCCGUUg -5'
5406 5' -55 NC_001798.1 + 147146 0.66 0.93869
Target:  5'- cGAuuCCCGgccgGGGGUC-C-CGGGUAGCc -3'
miRNA:   3'- cCUuuGGGU----UCCCAGuGcGCCCGUUG- -5'
5406 5' -55 NC_001798.1 + 154395 0.66 0.93869
Target:  5'- gGGggGCgCGAaggcGGGcggcggcggCGgGCGGGCGGCa -3'
miRNA:   3'- -CCuuUGgGUU----CCCa--------GUgCGCCCGUUG- -5'
5406 5' -55 NC_001798.1 + 150464 0.66 0.93869
Target:  5'- cGGccGCgCGGGGG-CGCGCGGcGCGc- -3'
miRNA:   3'- -CCuuUGgGUUCCCaGUGCGCC-CGUug -5'
5406 5' -55 NC_001798.1 + 150200 0.66 0.93869
Target:  5'- gGGggGCggcaCCGGGGGUguuggugcCGCGGGgGACc -3'
miRNA:   3'- -CCuuUG----GGUUCCCAgu------GCGCCCgUUG- -5'
5406 5' -55 NC_001798.1 + 74028 0.66 0.93869
Target:  5'- uGGAGuACCCGGcGG-CGCGC-GGCGGCc -3'
miRNA:   3'- -CCUU-UGGGUUcCCaGUGCGcCCGUUG- -5'
5406 5' -55 NC_001798.1 + 4132 0.66 0.93869
Target:  5'- cGGGGcgccGCCCccGGGGcCcuCGCGGGCAc- -3'
miRNA:   3'- -CCUU----UGGGu-UCCCaGu-GCGCCCGUug -5'
5406 5' -55 NC_001798.1 + 57 0.66 0.93869
Target:  5'- gGGggGCgCGAaggcGGGcggcggcggCGgGCGGGCGGCa -3'
miRNA:   3'- -CCuuUGgGUU----CCCa--------GUgCGCCCGUUG- -5'
5406 5' -55 NC_001798.1 + 109367 0.66 0.93869
Target:  5'- uGGccGCCCGGGGaG-CA-GCGGGCuGCg -3'
miRNA:   3'- -CCuuUGGGUUCC-CaGUgCGCCCGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.