miRNA display CGI


Results 1 - 20 of 277 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5419 3' -68.2 NC_001798.1 + 135983 0.66 0.441342
Target:  5'- cGCGUCGugcgcguauguCCCGGggGCGGGGAgUCGGUCgGc -3'
miRNA:   3'- -CGCGGC-----------GGGCC--UGCCCCU-GGCCGGgC- -5'
5419 3' -68.2 NC_001798.1 + 2811 0.66 0.441342
Target:  5'- aGCGCCggGCCCaGGGCcccGGcGACCaGGCUCa -3'
miRNA:   3'- -CGCGG--CGGG-CCUGc--CC-CUGG-CCGGGc -5'
5419 3' -68.2 NC_001798.1 + 44912 0.66 0.441342
Target:  5'- gGUGCUGUgCGGuuGGGGAaCGcGCCCc -3'
miRNA:   3'- -CGCGGCGgGCCugCCCCUgGC-CGGGc -5'
5419 3' -68.2 NC_001798.1 + 51272 0.66 0.441342
Target:  5'- aGCGCCaucacgcggGCCCc-GCGGGGAggcuaCCugGGCCCGa -3'
miRNA:   3'- -CGCGG---------CGGGccUGCCCCU-----GG--CCGGGC- -5'
5419 3' -68.2 NC_001798.1 + 78223 0.66 0.441342
Target:  5'- cGCGaUCGCCUGGACGccauCCGGgCCGa -3'
miRNA:   3'- -CGC-GGCGGGCCUGCcccuGGCCgGGC- -5'
5419 3' -68.2 NC_001798.1 + 152607 0.66 0.441342
Target:  5'- uGCGCCGCCCcccgccGACGcagauGGGAguccccCCGGCgCCc -3'
miRNA:   3'- -CGCGGCGGGc-----CUGC-----CCCU------GGCCG-GGc -5'
5419 3' -68.2 NC_001798.1 + 4737 0.66 0.441342
Target:  5'- -gGCCucCCCGGACGccGGGGCCGcCUCGu -3'
miRNA:   3'- cgCGGc-GGGCCUGC--CCCUGGCcGGGC- -5'
5419 3' -68.2 NC_001798.1 + 97827 0.66 0.441342
Target:  5'- cGCGCuucugCGCCCuGACGGcGGGCgCGGgCaCGg -3'
miRNA:   3'- -CGCG-----GCGGGcCUGCC-CCUG-GCCgG-GC- -5'
5419 3' -68.2 NC_001798.1 + 31242 0.66 0.44052
Target:  5'- gGCGgCGCCCcguugcGGGCGGGGGugggaucUgGGUCUGg -3'
miRNA:   3'- -CGCgGCGGG------CCUGCCCCU-------GgCCGGGC- -5'
5419 3' -68.2 NC_001798.1 + 70557 0.66 0.436426
Target:  5'- -gGCCGCCgGGcuGCGcaccacggcggcccuGGGGCCGGUgCGc -3'
miRNA:   3'- cgCGGCGGgCC--UGC---------------CCCUGGCCGgGC- -5'
5419 3' -68.2 NC_001798.1 + 91786 0.66 0.436426
Target:  5'- aCGCC-CCCugccgaugacgcgcgGGGCguGGGGACCgugggcggGGCCCGa -3'
miRNA:   3'- cGCGGcGGG---------------CCUG--CCCCUGG--------CCGGGC- -5'
5419 3' -68.2 NC_001798.1 + 75261 0.66 0.433167
Target:  5'- -gGCCGCCaCGG-CGGu--CCGGCUCGc -3'
miRNA:   3'- cgCGGCGG-GCCuGCCccuGGCCGGGC- -5'
5419 3' -68.2 NC_001798.1 + 25601 0.66 0.433167
Target:  5'- nGgGCCGCgC---CGGGGGCgGGCCCc -3'
miRNA:   3'- -CgCGGCGgGccuGCCCCUGgCCGGGc -5'
5419 3' -68.2 NC_001798.1 + 29792 0.66 0.433167
Target:  5'- -aGCU-CCCGGGCGGaccCCGGCCCc -3'
miRNA:   3'- cgCGGcGGGCCUGCCccuGGCCGGGc -5'
5419 3' -68.2 NC_001798.1 + 81112 0.66 0.432354
Target:  5'- aGCGCCGCCgacgCGGaccccuucuucgcGCGGGccauccucGGgCGGCCCu -3'
miRNA:   3'- -CGCGGCGG----GCC-------------UGCCC--------CUgGCCGGGc -5'
5419 3' -68.2 NC_001798.1 + 16166 0.66 0.432354
Target:  5'- aGCGCCacgggcgGCCC--GCGGGGACCGGg--- -3'
miRNA:   3'- -CGCGG-------CGGGccUGCCCCUGGCCgggc -5'
5419 3' -68.2 NC_001798.1 + 135006 0.66 0.42508
Target:  5'- gGCGCCagggucguccuGCCCccGCGGGcauGGCCGGCCg- -3'
miRNA:   3'- -CGCGG-----------CGGGccUGCCC---CUGGCCGGgc -5'
5419 3' -68.2 NC_001798.1 + 98286 0.66 0.42508
Target:  5'- uGCGCCGCCCcGACuGcaGCC-GCCCGa -3'
miRNA:   3'- -CGCGGCGGGcCUGcCccUGGcCGGGC- -5'
5419 3' -68.2 NC_001798.1 + 83617 0.66 0.42508
Target:  5'- cGCGCCGUaagaaucgggCCGGagGCGGGagcggaggggauGugCGGCUCGc -3'
miRNA:   3'- -CGCGGCG----------GGCC--UGCCC------------CugGCCGGGC- -5'
5419 3' -68.2 NC_001798.1 + 39401 0.66 0.42508
Target:  5'- gGCGCCuuucGCuCCgGGACcGGGGCgCGGCCg- -3'
miRNA:   3'- -CGCGG----CG-GG-CCUGcCCCUG-GCCGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.