miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5419 5' -57.6 NC_001798.1 + 72836 0.66 0.847786
Target:  5'- uAUCAGGCCGcacgcGCGGca----CGGGCCc -3'
miRNA:   3'- -UAGUCCGGCa----CGUCaacaagGCCCGG- -5'
5419 5' -57.6 NC_001798.1 + 24139 0.66 0.847786
Target:  5'- -gCGGGCCGUGCcccaccuggGGUacgccaUGgcggCGGGCCg -3'
miRNA:   3'- uaGUCCGGCACG---------UCA------ACaag-GCCCGG- -5'
5419 5' -57.6 NC_001798.1 + 146472 0.66 0.847786
Target:  5'- -gCAGcGCCGcggGCuccgGggCCGGGCCg -3'
miRNA:   3'- uaGUC-CGGCa--CGucaaCaaGGCCCGG- -5'
5419 5' -57.6 NC_001798.1 + 105409 0.66 0.839748
Target:  5'- --aGGGCCGccGCGGccgcggUGcgCUGGGCCu -3'
miRNA:   3'- uagUCCGGCa-CGUCa-----ACaaGGCCCGG- -5'
5419 5' -57.6 NC_001798.1 + 102488 0.66 0.839748
Target:  5'- -gCGGGuaGUGCGGggacGggCCGGcGCCg -3'
miRNA:   3'- uaGUCCggCACGUCaa--CaaGGCC-CGG- -5'
5419 5' -57.6 NC_001798.1 + 63301 0.66 0.831523
Target:  5'- gAUCAGGCCcaGCAGgcGaUCCGcGCUg -3'
miRNA:   3'- -UAGUCCGGcaCGUCaaCaAGGCcCGG- -5'
5419 5' -57.6 NC_001798.1 + 120215 0.66 0.823118
Target:  5'- cUCGGGCCccggGCcGUUGgcccccgCCGaGGCCa -3'
miRNA:   3'- uAGUCCGGca--CGuCAACaa-----GGC-CCGG- -5'
5419 5' -57.6 NC_001798.1 + 10712 0.66 0.823118
Target:  5'- -gCAGGCauc-CAGggGUUCCGcGGCCc -3'
miRNA:   3'- uaGUCCGgcacGUCaaCAAGGC-CCGG- -5'
5419 5' -57.6 NC_001798.1 + 2797 0.66 0.823118
Target:  5'- -gCGGGCUccGCGGcaGcgCCGGGCCc -3'
miRNA:   3'- uaGUCCGGcaCGUCaaCaaGGCCCGG- -5'
5419 5' -57.6 NC_001798.1 + 6369 0.66 0.81454
Target:  5'- -aCGGGCCGggggGCcGggGggCCgggGGGCCg -3'
miRNA:   3'- uaGUCCGGCa---CGuCaaCaaGG---CCCGG- -5'
5419 5' -57.6 NC_001798.1 + 115029 0.66 0.81454
Target:  5'- --aAGGCCGUGCGGagccUGgaCgacgUGGGCCg -3'
miRNA:   3'- uagUCCGGCACGUCa---ACaaG----GCCCGG- -5'
5419 5' -57.6 NC_001798.1 + 20337 0.66 0.81454
Target:  5'- -cCAGGUgGcgcagGCGGUUGgcgcugCCGGGCg -3'
miRNA:   3'- uaGUCCGgCa----CGUCAACaa----GGCCCGg -5'
5419 5' -57.6 NC_001798.1 + 148181 0.67 0.805798
Target:  5'- --uGGGCCGUGU---UGUggUGGGCCg -3'
miRNA:   3'- uagUCCGGCACGucaACAagGCCCGG- -5'
5419 5' -57.6 NC_001798.1 + 30765 0.67 0.805798
Target:  5'- --gAGGCCGagGCGGccGUg-CGGGCCg -3'
miRNA:   3'- uagUCCGGCa-CGUCaaCAagGCCCGG- -5'
5419 5' -57.6 NC_001798.1 + 139544 0.67 0.805798
Target:  5'- -gCAGguGCCGcgccUGCAGUgGUUCCGGGaCg -3'
miRNA:   3'- uaGUC--CGGC----ACGUCAaCAAGGCCCgG- -5'
5419 5' -57.6 NC_001798.1 + 153076 0.67 0.805798
Target:  5'- -gCGGGCgGagcgGCGGggcgGcgCCGGGCCc -3'
miRNA:   3'- uaGUCCGgCa---CGUCaa--CaaGGCCCGG- -5'
5419 5' -57.6 NC_001798.1 + 144062 0.67 0.805798
Target:  5'- -cCAGGCCGUGCGccUGg-CCGGGa- -3'
miRNA:   3'- uaGUCCGGCACGUcaACaaGGCCCgg -5'
5419 5' -57.6 NC_001798.1 + 4837 0.67 0.7969
Target:  5'- -cCGGGCCGcGCGGcgGggcgacggUCCGGGUUc -3'
miRNA:   3'- uaGUCCGGCaCGUCaaCa-------AGGCCCGG- -5'
5419 5' -57.6 NC_001798.1 + 122041 0.67 0.787854
Target:  5'- -cCAGGCCGUcaGCGGggGagccCUGGGCg -3'
miRNA:   3'- uaGUCCGGCA--CGUCaaCaa--GGCCCGg -5'
5419 5' -57.6 NC_001798.1 + 63714 0.67 0.787854
Target:  5'- ---uGGCCGgGUGGUUGauggUgCGGGCCa -3'
miRNA:   3'- uaguCCGGCaCGUCAACa---AgGCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.