miRNA display CGI


Results 1 - 20 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5422 3' -60.2 NC_001798.1 + 52485 0.66 0.763053
Target:  5'- gGCCuGCggggaCGCGcGCCGGcGCAGGGacgacgcggcGGCCg -3'
miRNA:   3'- -CGGuCG-----GCGCaCGGCU-UGUCCU----------CCGG- -5'
5422 3' -60.2 NC_001798.1 + 122197 0.66 0.763053
Target:  5'- cGCCaAGCCGCGaucgcugGUCGAguggcuggaccGCGGGugggaagcucuGGCCg -3'
miRNA:   3'- -CGG-UCGGCGCa------CGGCU-----------UGUCCu----------CCGG- -5'
5422 3' -60.2 NC_001798.1 + 11754 0.66 0.763053
Target:  5'- cCCAGgCGCGggGCCGAAaaGGGAaGCUg -3'
miRNA:   3'- cGGUCgGCGCa-CGGCUUg-UCCUcCGG- -5'
5422 3' -60.2 NC_001798.1 + 31379 0.66 0.763053
Target:  5'- ---cGCCGCGgcgGCgGAggGCAGGAcGCCc -3'
miRNA:   3'- cgguCGGCGCa--CGgCU--UGUCCUcCGG- -5'
5422 3' -60.2 NC_001798.1 + 48514 0.66 0.763053
Target:  5'- uGUCAGCaCGCGUuuguGgCGAgggGCGGGAGGg- -3'
miRNA:   3'- -CGGUCG-GCGCA----CgGCU---UGUCCUCCgg -5'
5422 3' -60.2 NC_001798.1 + 74640 0.66 0.763053
Target:  5'- aCCGGCCcccCGagGCCcccCGGGGGGCCu -3'
miRNA:   3'- cGGUCGGc--GCa-CGGcuuGUCCUCCGG- -5'
5422 3' -60.2 NC_001798.1 + 77435 0.66 0.763053
Target:  5'- cGCCgGGCCuGCGcccaGCCGG--AGGGGGaCCa -3'
miRNA:   3'- -CGG-UCGG-CGCa---CGGCUugUCCUCC-GG- -5'
5422 3' -60.2 NC_001798.1 + 87757 0.66 0.763053
Target:  5'- gGCCcugAGCCGCGcgGCCacgucgucCGGGGGGUg -3'
miRNA:   3'- -CGG---UCGGCGCa-CGGcuu-----GUCCUCCGg -5'
5422 3' -60.2 NC_001798.1 + 119894 0.66 0.763053
Target:  5'- cCCGGUCGgG-GCCGc-CAGGuaaauGGCCa -3'
miRNA:   3'- cGGUCGGCgCaCGGCuuGUCCu----CCGG- -5'
5422 3' -60.2 NC_001798.1 + 152504 0.66 0.763053
Target:  5'- -aUAGCCGCGcGCCccgGCGGG-GGCg -3'
miRNA:   3'- cgGUCGGCGCaCGGcu-UGUCCuCCGg -5'
5422 3' -60.2 NC_001798.1 + 89665 0.66 0.763053
Target:  5'- cGCCGaucaccCCGCGcUGCgCGGGCccGGAGGCg -3'
miRNA:   3'- -CGGUc-----GGCGC-ACG-GCUUGu-CCUCCGg -5'
5422 3' -60.2 NC_001798.1 + 71122 0.66 0.75381
Target:  5'- cGCUgauGGCgCGCGUG-CGGAC-GGAcgcGGCCg -3'
miRNA:   3'- -CGG---UCG-GCGCACgGCUUGuCCU---CCGG- -5'
5422 3' -60.2 NC_001798.1 + 2334 0.66 0.75381
Target:  5'- cGCCAcGgCGCGggGaaGAGCGGGuGGUCc -3'
miRNA:   3'- -CGGU-CgGCGCa-CggCUUGUCCuCCGG- -5'
5422 3' -60.2 NC_001798.1 + 149430 0.66 0.75381
Target:  5'- cGCaguuGCgCGCGUGCUcgggGAGCAGGGugcGGCg -3'
miRNA:   3'- -CGgu--CG-GCGCACGG----CUUGUCCU---CCGg -5'
5422 3' -60.2 NC_001798.1 + 81708 0.66 0.75381
Target:  5'- cGCCGcuuucuccGCCGcCGUGCCGcgcgugcGCAGGucccGCCg -3'
miRNA:   3'- -CGGU--------CGGC-GCACGGCu------UGUCCuc--CGG- -5'
5422 3' -60.2 NC_001798.1 + 4080 0.66 0.75381
Target:  5'- gGUC-GCCGCGgggguccggGCCgGGGCGGGcucGGCCc -3'
miRNA:   3'- -CGGuCGGCGCa--------CGG-CUUGUCCu--CCGG- -5'
5422 3' -60.2 NC_001798.1 + 83558 0.66 0.75381
Target:  5'- uGUCGGCgGUaaugGUGCUGGggcggugaaacuGCGGGGcGGCCa -3'
miRNA:   3'- -CGGUCGgCG----CACGGCU------------UGUCCU-CCGG- -5'
5422 3' -60.2 NC_001798.1 + 25762 0.66 0.75381
Target:  5'- gGCguGCUGC-UGCUGuccacGCGGGAccuGGCCu -3'
miRNA:   3'- -CGguCGGCGcACGGCu----UGUCCU---CCGG- -5'
5422 3' -60.2 NC_001798.1 + 151137 0.66 0.75288
Target:  5'- gGCCAggucaucguccucGUCGUccGUGCCGGGCcacgGGGGGGUg -3'
miRNA:   3'- -CGGU-------------CGGCG--CACGGCUUG----UCCUCCGg -5'
5422 3' -60.2 NC_001798.1 + 121385 0.66 0.75288
Target:  5'- uGCC-GCCuaCGUGCCGGcggaugcGguGGGGGCg -3'
miRNA:   3'- -CGGuCGGc-GCACGGCU-------UguCCUCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.