miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5422 5' -55.4 NC_001798.1 + 109984 0.66 0.943056
Target:  5'- -uGGCCUCCGUUCucacGCGcUgGGCGc -3'
miRNA:   3'- ccCCGGAGGCAGGuuuuUGC-AgCCGU- -5'
5422 5' -55.4 NC_001798.1 + 88755 0.66 0.943056
Target:  5'- gGGGGCgCgcaugCCGgccgccUCCGGAAA-GUCGGCc -3'
miRNA:   3'- -CCCCG-Ga----GGC------AGGUUUUUgCAGCCGu -5'
5422 5' -55.4 NC_001798.1 + 44373 0.66 0.943056
Target:  5'- --cGCCUCCaaGUCCAGAguugcuguGACGUgGGCc -3'
miRNA:   3'- cccCGGAGG--CAGGUUU--------UUGCAgCCGu -5'
5422 5' -55.4 NC_001798.1 + 33338 0.66 0.943056
Target:  5'- gGGGGCCcgaUCGUgCAGAGcacgcACGUCuGGCc -3'
miRNA:   3'- -CCCCGGa--GGCAgGUUUU-----UGCAG-CCGu -5'
5422 5' -55.4 NC_001798.1 + 153336 0.66 0.94169
Target:  5'- cGGGCCUCgGgcUCCAGGcACGguccgaugaccgccUCGGCc -3'
miRNA:   3'- cCCCGGAGgC--AGGUUUuUGC--------------AGCCGu -5'
5422 5' -55.4 NC_001798.1 + 69453 0.66 0.941229
Target:  5'- gGGGGCC-CUGUCCcccAAAAGCaccgggccgucgCGGCGa -3'
miRNA:   3'- -CCCCGGaGGCAGG---UUUUUGca----------GCCGU- -5'
5422 5' -55.4 NC_001798.1 + 127941 0.66 0.938419
Target:  5'- cGGGGCC-CCGggCGAAAAgGccCGGCc -3'
miRNA:   3'- -CCCCGGaGGCagGUUUUUgCa-GCCGu -5'
5422 5' -55.4 NC_001798.1 + 95696 0.66 0.933547
Target:  5'- gGGGGCggCCGgcgucgcCCGAAAGCGggcguuucaCGGCGa -3'
miRNA:   3'- -CCCCGgaGGCa------GGUUUUUGCa--------GCCGU- -5'
5422 5' -55.4 NC_001798.1 + 143298 0.66 0.933547
Target:  5'- aGGGGCCgUCCGcCCcc-GGCGggucgcCGGCc -3'
miRNA:   3'- -CCCCGG-AGGCaGGuuuUUGCa-----GCCGu -5'
5422 5' -55.4 NC_001798.1 + 8222 0.66 0.933547
Target:  5'- uGGGuCCUUCGUCUGGAGccCGUaccCGGCAg -3'
miRNA:   3'- cCCC-GGAGGCAGGUUUUu-GCA---GCCGU- -5'
5422 5' -55.4 NC_001798.1 + 87976 0.66 0.933047
Target:  5'- cGGGGCUUggacgcgCC-UCCcGGGGgGUCGGCAu -3'
miRNA:   3'- -CCCCGGA-------GGcAGGuUUUUgCAGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 59753 0.66 0.93051
Target:  5'- gGGGuGCCUCCGcuugguucccggcggUuCCGGGAACGcgggCGGUAc -3'
miRNA:   3'- -CCC-CGGAGGC---------------A-GGUUUUUGCa---GCCGU- -5'
5422 5' -55.4 NC_001798.1 + 153839 0.66 0.929996
Target:  5'- cGGGGCCUCCGgcgCCuuccccccgcccuCGcUCGGgGg -3'
miRNA:   3'- -CCCCGGAGGCa--GGuuuuu--------GC-AGCCgU- -5'
5422 5' -55.4 NC_001798.1 + 88059 0.66 0.928438
Target:  5'- gGGGGCgggCuCGUCCccuGGGGCGgCGGCGu -3'
miRNA:   3'- -CCCCGga-G-GCAGGu--UUUUGCaGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 79251 0.66 0.928438
Target:  5'- gGGGGCCUgCUGgCgGAGuucGACG-CGGCGg -3'
miRNA:   3'- -CCCCGGA-GGCaGgUUU---UUGCaGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 15764 0.66 0.928438
Target:  5'- aGGGGCgUCUucUCCGGAgcgGACGUaGGCGa -3'
miRNA:   3'- -CCCCGgAGGc-AGGUUU---UUGCAgCCGU- -5'
5422 5' -55.4 NC_001798.1 + 106072 0.66 0.923093
Target:  5'- gGGGGCCUUUgcgGUCU---GGCGgucgCGGCGa -3'
miRNA:   3'- -CCCCGGAGG---CAGGuuuUUGCa---GCCGU- -5'
5422 5' -55.4 NC_001798.1 + 144299 0.66 0.923093
Target:  5'- -cGGCC-CaGUCCAGGGGCacggaaGUCGGCAg -3'
miRNA:   3'- ccCCGGaGgCAGGUUUUUG------CAGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 79950 0.66 0.923093
Target:  5'- uGGGCUgggCGUCCG-GAGCGgCGGCGc -3'
miRNA:   3'- cCCCGGag-GCAGGUuUUUGCaGCCGU- -5'
5422 5' -55.4 NC_001798.1 + 43035 0.66 0.923093
Target:  5'- cGGGGCC-CCGggCGcAAAUG-CGGCGc -3'
miRNA:   3'- -CCCCGGaGGCagGUuUUUGCaGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.