miRNA display CGI


Results 1 - 20 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5423 3' -67.8 NC_001798.1 + 93492 0.66 0.432746
Target:  5'- cCGGGUaCGaggGGCGCCccACGGCgCCCCu -3'
miRNA:   3'- -GUCCAgGCgg-CCGCGG--UGCCG-GGGGc -5'
5423 3' -67.8 NC_001798.1 + 5610 0.66 0.432746
Target:  5'- -uGGUCCGCgGGCGgCuCcGCCCCa- -3'
miRNA:   3'- guCCAGGCGgCCGCgGuGcCGGGGgc -5'
5423 3' -67.8 NC_001798.1 + 149 0.66 0.432746
Target:  5'- ----cCCGCgGGCGCCGCcccucCCCCCGc -3'
miRNA:   3'- guccaGGCGgCCGCGGUGcc---GGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 1188 0.66 0.432746
Target:  5'- ----gCCGCCGccCGCCGCGGCCagcaCCGu -3'
miRNA:   3'- guccaGGCGGCc-GCGGUGCCGGg---GGC- -5'
5423 3' -67.8 NC_001798.1 + 91610 0.66 0.432746
Target:  5'- gCAGG-CCGCgcuuaugGGCGgC-CGGCCgCCCGg -3'
miRNA:   3'- -GUCCaGGCGg------CCGCgGuGCCGG-GGGC- -5'
5423 3' -67.8 NC_001798.1 + 126265 0.66 0.432746
Target:  5'- cCGGG--CGuCCGGaCGCCcaaGCGGCCCCUc -3'
miRNA:   3'- -GUCCagGC-GGCC-GCGG---UGCCGGGGGc -5'
5423 3' -67.8 NC_001798.1 + 127745 0.66 0.432746
Target:  5'- -cGG-CCGCCgcaacacccGGCGCCAaGcGCCCCgCGg -3'
miRNA:   3'- guCCaGGCGG---------CCGCGGUgC-CGGGG-GC- -5'
5423 3' -67.8 NC_001798.1 + 154487 0.66 0.432746
Target:  5'- ----cCCGCgGGCGCCGCcccucCCCCCGc -3'
miRNA:   3'- guccaGGCGgCCGCGGUGcc---GGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 149687 0.66 0.42946
Target:  5'- uCGGGgCCGCCcucgcguGGCGCgucuuccuggcacaCuuccuCGGCCCCCGc -3'
miRNA:   3'- -GUCCaGGCGG-------CCGCG--------------Gu----GCCGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 77615 0.66 0.42456
Target:  5'- aAGGUCa-UCGGCGCCACGcgacGCCgCgCCGa -3'
miRNA:   3'- gUCCAGgcGGCCGCGGUGC----CGG-G-GGC- -5'
5423 3' -67.8 NC_001798.1 + 180 0.66 0.42456
Target:  5'- gCGGGgcugccuucCCGCgGGCGCCcccgcGCGGCUuuuuuCCCGc -3'
miRNA:   3'- -GUCCa--------GGCGgCCGCGG-----UGCCGG-----GGGC- -5'
5423 3' -67.8 NC_001798.1 + 1402 0.66 0.42456
Target:  5'- aCGGG-CCGCagCGGCGCgCccaGGCCCCa- -3'
miRNA:   3'- -GUCCaGGCG--GCCGCG-Gug-CCGGGGgc -5'
5423 3' -67.8 NC_001798.1 + 134994 0.66 0.42456
Target:  5'- -uGGcCCGCggugGGCGCCAgGgucguccuGCCCCCGc -3'
miRNA:   3'- guCCaGGCGg---CCGCGGUgC--------CGGGGGC- -5'
5423 3' -67.8 NC_001798.1 + 154518 0.66 0.42456
Target:  5'- gCGGGgcugccuucCCGCgGGCGCCcccgcGCGGCUuuuuuCCCGc -3'
miRNA:   3'- -GUCCa--------GGCGgCCGCGG-----UGCCGG-----GGGC- -5'
5423 3' -67.8 NC_001798.1 + 25378 0.66 0.42456
Target:  5'- ----cCCGCgccgUGGCGCC-CGGCCCUCa -3'
miRNA:   3'- guccaGGCG----GCCGCGGuGCCGGGGGc -5'
5423 3' -67.8 NC_001798.1 + 25782 0.66 0.42456
Target:  5'- gCGGGaccuggccUUCGCCGGCGCCGUGGaguUCCUGg -3'
miRNA:   3'- -GUCC--------AGGCGGCCGCGGUGCCg--GGGGC- -5'
5423 3' -67.8 NC_001798.1 + 116774 0.66 0.42456
Target:  5'- -cGGcgCUGCUGuGCuCCGCGGCgCCCGa -3'
miRNA:   3'- guCCa-GGCGGC-CGcGGUGCCGgGGGC- -5'
5423 3' -67.8 NC_001798.1 + 59801 0.66 0.42456
Target:  5'- cCGGG-CCuggcccucgagGCCuucuucuucuggGGCGCCGCGGUCgCCCGc -3'
miRNA:   3'- -GUCCaGG-----------CGG------------CCGCGGUGCCGG-GGGC- -5'
5423 3' -67.8 NC_001798.1 + 24173 0.66 0.423746
Target:  5'- gCGGG-CCGCUucggcuggggccuGGCGCacgugGCGGCCgCCGu -3'
miRNA:   3'- -GUCCaGGCGG-------------CCGCGg----UGCCGGgGGC- -5'
5423 3' -67.8 NC_001798.1 + 96994 0.66 0.416466
Target:  5'- gCGGGgCCaggGCCGGC-CCGCcGCCCgCCGa -3'
miRNA:   3'- -GUCCaGG---CGGCCGcGGUGcCGGG-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.