miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5423 5' -52.4 NC_001798.1 + 4116 0.66 0.984707
Target:  5'- cCugGGcgGGCucgGCCggGGCG-CCGCCCc -3'
miRNA:   3'- -GugUUuuUUG---UGGuaCCGCgGGCGGG- -5'
5423 5' -52.4 NC_001798.1 + 80151 0.66 0.984707
Target:  5'- aCGCAGcgGAguCCAUGcuguucguccaGCGCCUGaCCCc -3'
miRNA:   3'- -GUGUUuuUUguGGUAC-----------CGCGGGC-GGG- -5'
5423 5' -52.4 NC_001798.1 + 73678 0.66 0.984707
Target:  5'- aACAGuacuCAUCG-GGaCGCCCgGCCCa -3'
miRNA:   3'- gUGUUuuuuGUGGUaCC-GCGGG-CGGG- -5'
5423 5' -52.4 NC_001798.1 + 4350 0.66 0.984707
Target:  5'- gGCGGccGAGCGCCGgcggGGgGCgCGCCg -3'
miRNA:   3'- gUGUUu-UUUGUGGUa---CCgCGgGCGGg -5'
5423 5' -52.4 NC_001798.1 + 135322 0.66 0.984707
Target:  5'- uGCu-GGAGCGCC-UGGUGCCggacgcgugcgaCGCCUg -3'
miRNA:   3'- gUGuuUUUUGUGGuACCGCGG------------GCGGG- -5'
5423 5' -52.4 NC_001798.1 + 70442 0.66 0.984707
Target:  5'- uGCAccgcAugGCgGUGGCGCUC-CCCg -3'
miRNA:   3'- gUGUuuu-UugUGgUACCGCGGGcGGG- -5'
5423 5' -52.4 NC_001798.1 + 52051 0.66 0.984707
Target:  5'- gCGCuccuGGGGCGCgacugucgCGUGGcCGCCCGCUa -3'
miRNA:   3'- -GUGuu--UUUUGUG--------GUACC-GCGGGCGGg -5'
5423 5' -52.4 NC_001798.1 + 153743 0.66 0.982996
Target:  5'- gCGCAGccguAGCGCCAgguggggcggaagggGGCGCUgcgGCCCg -3'
miRNA:   3'- -GUGUUuu--UUGUGGUa--------------CCGCGGg--CGGG- -5'
5423 5' -52.4 NC_001798.1 + 115238 0.66 0.982798
Target:  5'- cCugGu-GGGCGCCAUGGaccugacguuCGuCCUGCCCc -3'
miRNA:   3'- -GugUuuUUUGUGGUACC----------GC-GGGCGGG- -5'
5423 5' -52.4 NC_001798.1 + 33653 0.66 0.982798
Target:  5'- gCACAccugccCGCCA---CGCCCGCCCc -3'
miRNA:   3'- -GUGUuuuuu-GUGGUaccGCGGGCGGG- -5'
5423 5' -52.4 NC_001798.1 + 33760 0.66 0.982798
Target:  5'- gCACAccugccCGCCA---CGCCCGCCCc -3'
miRNA:   3'- -GUGUuuuuu-GUGGUaccGCGGGCGGG- -5'
5423 5' -52.4 NC_001798.1 + 72914 0.66 0.982798
Target:  5'- uGCAGAcgGAGCGCgcgcugguCGUGGCGCgcuUCGCCa -3'
miRNA:   3'- gUGUUU--UUUGUG--------GUACCGCG---GGCGGg -5'
5423 5' -52.4 NC_001798.1 + 309 0.66 0.982798
Target:  5'- aCGCcAGucGCACCAc--CGCUCGCCCu -3'
miRNA:   3'- -GUGuUUuuUGUGGUaccGCGGGCGGG- -5'
5423 5' -52.4 NC_001798.1 + 31652 0.66 0.982798
Target:  5'- uGCGAGcgcGGACGCgGccgGGCccGCgCCGCCCg -3'
miRNA:   3'- gUGUUU---UUUGUGgUa--CCG--CG-GGCGGG- -5'
5423 5' -52.4 NC_001798.1 + 83230 0.66 0.982798
Target:  5'- aACGAGAGACgGCCGcGGaggGaCCCGCCg -3'
miRNA:   3'- gUGUUUUUUG-UGGUaCCg--C-GGGCGGg -5'
5423 5' -52.4 NC_001798.1 + 97151 0.66 0.982798
Target:  5'- cCACuc----CACCAUGGaCGCCuuCGCCg -3'
miRNA:   3'- -GUGuuuuuuGUGGUACC-GCGG--GCGGg -5'
5423 5' -52.4 NC_001798.1 + 26569 0.66 0.982798
Target:  5'- cCACGc----CGCCGaGGCGCgaGCCCg -3'
miRNA:   3'- -GUGUuuuuuGUGGUaCCGCGggCGGG- -5'
5423 5' -52.4 NC_001798.1 + 44130 0.66 0.982798
Target:  5'- -cCAAAAGGgGCUuugGGCGCUcccauaauaCGCCCg -3'
miRNA:   3'- guGUUUUUUgUGGua-CCGCGG---------GCGGG- -5'
5423 5' -52.4 NC_001798.1 + 122362 0.66 0.982798
Target:  5'- gGCGugGGGCgGgCGacGCGCCCGCCCc -3'
miRNA:   3'- gUGUuuUUUG-UgGUacCGCGGGCGGG- -5'
5423 5' -52.4 NC_001798.1 + 2008 0.66 0.982798
Target:  5'- cCGCcc-AGGCgGCCGUGGCggGCCCGCa- -3'
miRNA:   3'- -GUGuuuUUUG-UGGUACCG--CGGGCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.