miRNA display CGI


Results 1 - 20 of 232 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5428 5' -61.1 NC_001798.1 + 51628 0.66 0.690436
Target:  5'- gCGCGUGGGgGucaugcacuuugccuCCCCgGCCGacCCAAAGGu -3'
miRNA:   3'- -GCGCGCCCgU---------------GGGGgCGGU--GGUUUUU- -5'
5428 5' -61.1 NC_001798.1 + 29382 0.66 0.686491
Target:  5'- gGgGCGGGCACCacucagggCCgCGCCGgCGGGGc -3'
miRNA:   3'- gCgCGCCCGUGG--------GG-GCGGUgGUUUUu -5'
5428 5' -61.1 NC_001798.1 + 22518 0.66 0.686491
Target:  5'- aGCGCGGcUACCgacgCgGCCGCCAGGAu -3'
miRNA:   3'- gCGCGCCcGUGGg---GgCGGUGGUUUUu -5'
5428 5' -61.1 NC_001798.1 + 36642 0.66 0.686491
Target:  5'- gGCGgGGGCGCgcuuuCCCCGCguCGCCc---- -3'
miRNA:   3'- gCGCgCCCGUG-----GGGGCG--GUGGuuuuu -5'
5428 5' -61.1 NC_001798.1 + 90399 0.66 0.686491
Target:  5'- gGCGCGGuugggccggcGCGuuCCCGCgGCCGGGc- -3'
miRNA:   3'- gCGCGCC----------CGUggGGGCGgUGGUUUuu -5'
5428 5' -61.1 NC_001798.1 + 96892 0.66 0.686491
Target:  5'- aGCuGCGacGGUaccuGCCCCaCGCCGCCGGGc- -3'
miRNA:   3'- gCG-CGC--CCG----UGGGG-GCGGUGGUUUuu -5'
5428 5' -61.1 NC_001798.1 + 81137 0.66 0.686491
Target:  5'- uCGCGCGGGcCAUCCUCggGCgGCCc---- -3'
miRNA:   3'- -GCGCGCCC-GUGGGGG--CGgUGGuuuuu -5'
5428 5' -61.1 NC_001798.1 + 123448 0.66 0.686491
Target:  5'- cCGaCGCGcGCGCCCCCGaCCcggggcCCGAAGc -3'
miRNA:   3'- -GC-GCGCcCGUGGGGGC-GGu-----GGUUUUu -5'
5428 5' -61.1 NC_001798.1 + 23644 0.66 0.686491
Target:  5'- -cCGCGGGcCGCCUggagCGCCGCCGGGc- -3'
miRNA:   3'- gcGCGCCC-GUGGGg---GCGGUGGUUUuu -5'
5428 5' -61.1 NC_001798.1 + 146833 0.66 0.680562
Target:  5'- gGCGCGGcagcaacgaacgcagGgGCCCgCCGCCgAUCGAGAGg -3'
miRNA:   3'- gCGCGCC---------------CgUGGG-GGCGG-UGGUUUUU- -5'
5428 5' -61.1 NC_001798.1 + 76342 0.66 0.676601
Target:  5'- aGCG-GGGCcaGCCCCUagauGCCcCCGAGGAc -3'
miRNA:   3'- gCGCgCCCG--UGGGGG----CGGuGGUUUUU- -5'
5428 5' -61.1 NC_001798.1 + 37450 0.66 0.676601
Target:  5'- uCGCGCacguGGCgACCCCCGCUugUc---- -3'
miRNA:   3'- -GCGCGc---CCG-UGGGGGCGGugGuuuuu -5'
5428 5' -61.1 NC_001798.1 + 81964 0.66 0.676601
Target:  5'- uCGCGCccauccCGCCUCCGCCcGCCGAAGGa -3'
miRNA:   3'- -GCGCGccc---GUGGGGGCGG-UGGUUUUU- -5'
5428 5' -61.1 NC_001798.1 + 62821 0.66 0.676601
Target:  5'- aGCuGUGGGCccacgcGCCCCCGCCcgcguuuuaCAAGGAc -3'
miRNA:   3'- gCG-CGCCCG------UGGGGGCGGug-------GUUUUU- -5'
5428 5' -61.1 NC_001798.1 + 149983 0.66 0.676601
Target:  5'- gGCGC-GGCGCCCgCGgaCGCCGGGGc -3'
miRNA:   3'- gCGCGcCCGUGGGgGCg-GUGGUUUUu -5'
5428 5' -61.1 NC_001798.1 + 440 0.66 0.676601
Target:  5'- gCGCGCcacgGGGCugCgguCCCGCgGCCGc--- -3'
miRNA:   3'- -GCGCG----CCCGugG---GGGCGgUGGUuuuu -5'
5428 5' -61.1 NC_001798.1 + 48379 0.66 0.676601
Target:  5'- cCGCGgGGcGUGCCgCCGCgACCGc--- -3'
miRNA:   3'- -GCGCgCC-CGUGGgGGCGgUGGUuuuu -5'
5428 5' -61.1 NC_001798.1 + 50135 0.66 0.676601
Target:  5'- -cCGCGGGacaaCGCCCCCGCagacugucCACCAc--- -3'
miRNA:   3'- gcGCGCCC----GUGGGGGCG--------GUGGUuuuu -5'
5428 5' -61.1 NC_001798.1 + 147020 0.66 0.676601
Target:  5'- cCGgGCGGGCcggGgCUUgGCCGCCGAGGu -3'
miRNA:   3'- -GCgCGCCCG---UgGGGgCGGUGGUUUUu -5'
5428 5' -61.1 NC_001798.1 + 3817 0.66 0.676601
Target:  5'- cCGCGCcuccuccgccucGGGCGCCCCC-CagagGCCGGGGc -3'
miRNA:   3'- -GCGCG------------CCCGUGGGGGcGg---UGGUUUUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.