miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5429 5' -58 NC_001798.1 + 152260 0.66 0.852308
Target:  5'- cGCCCGGGAgcuCG-UGCCGGGCcgGGGUUc -3'
miRNA:   3'- aUGGGCUCU---GCuAUGGCUCG--UCCGGc -5'
5429 5' -58 NC_001798.1 + 137898 0.66 0.852308
Target:  5'- gGCCCgGAGAaGAUccgccuccGCCGGGC-GGCCc -3'
miRNA:   3'- aUGGG-CUCUgCUA--------UGGCUCGuCCGGc -5'
5429 5' -58 NC_001798.1 + 52055 0.66 0.852308
Target:  5'- -uCCUGGGGCGcgACUGucGCGuGGCCGc -3'
miRNA:   3'- auGGGCUCUGCuaUGGCu-CGU-CCGGC- -5'
5429 5' -58 NC_001798.1 + 126296 0.66 0.852308
Target:  5'- -cCCCGAGACGGcGCCGucucCGGaGCCc -3'
miRNA:   3'- auGGGCUCUGCUaUGGCuc--GUC-CGGc -5'
5429 5' -58 NC_001798.1 + 102460 0.66 0.849975
Target:  5'- aUACCCGgguacggguGGGCGGgaggaggcggguagUGCgGGGaCGGGCCGg -3'
miRNA:   3'- -AUGGGC---------UCUGCU--------------AUGgCUC-GUCCGGC- -5'
5429 5' -58 NC_001798.1 + 86235 0.66 0.844465
Target:  5'- gGCCCGcuGAUGGccaccgUGCUGaAGCAcGGCCGg -3'
miRNA:   3'- aUGGGCu-CUGCU------AUGGC-UCGU-CCGGC- -5'
5429 5' -58 NC_001798.1 + 77012 0.66 0.844465
Target:  5'- cACCCGAccccgGAUACCGcgacGGCucuGGCCGg -3'
miRNA:   3'- aUGGGCUcug--CUAUGGC----UCGu--CCGGC- -5'
5429 5' -58 NC_001798.1 + 109638 0.66 0.842075
Target:  5'- cGCCCc-GAUGGUccGCCGAGCGcuguuuuacgccacGGCCGu -3'
miRNA:   3'- aUGGGcuCUGCUA--UGGCUCGU--------------CCGGC- -5'
5429 5' -58 NC_001798.1 + 40958 0.66 0.828223
Target:  5'- -cCCCGGGA-GAUGa-GAGCGGuGCCGa -3'
miRNA:   3'- auGGGCUCUgCUAUggCUCGUC-CGGC- -5'
5429 5' -58 NC_001798.1 + 97616 0.66 0.828223
Target:  5'- gAgCUGGGGCGAcAUCGcgacGCGGGCCGc -3'
miRNA:   3'- aUgGGCUCUGCUaUGGCu---CGUCCGGC- -5'
5429 5' -58 NC_001798.1 + 6380 0.66 0.828223
Target:  5'- gGCCgGGGGgcCGGgggGCCGGG-GGGCCGg -3'
miRNA:   3'- aUGGgCUCU--GCUa--UGGCUCgUCCGGC- -5'
5429 5' -58 NC_001798.1 + 27217 0.66 0.828223
Target:  5'- -cCCCGGGGCGggGCgCGGGgGaggcGGCCGc -3'
miRNA:   3'- auGGGCUCUGCuaUG-GCUCgU----CCGGC- -5'
5429 5' -58 NC_001798.1 + 77203 0.66 0.828223
Target:  5'- -uCCCGcggcgacgguGGACGcgGCCGuGCGGGCg- -3'
miRNA:   3'- auGGGC----------UCUGCuaUGGCuCGUCCGgc -5'
5429 5' -58 NC_001798.1 + 83869 0.66 0.828223
Target:  5'- gGCCCGAGGCGGcgACCcccGGCccGGGCg- -3'
miRNA:   3'- aUGGGCUCUGCUa-UGGc--UCG--UCCGgc -5'
5429 5' -58 NC_001798.1 + 93940 0.66 0.819839
Target:  5'- --aCCGAGcGCGucaugGCCGAGCucgAGGCCc -3'
miRNA:   3'- augGGCUC-UGCua---UGGCUCG---UCCGGc -5'
5429 5' -58 NC_001798.1 + 149663 0.66 0.819839
Target:  5'- gGCgCCGGGucGCGGgccCCGGGCucgGGGCCGc -3'
miRNA:   3'- aUG-GGCUC--UGCUau-GGCUCG---UCCGGC- -5'
5429 5' -58 NC_001798.1 + 146282 0.66 0.819839
Target:  5'- aGCCgGAGAg---GCCGAGCGgggagugggcGGCCGg -3'
miRNA:   3'- aUGGgCUCUgcuaUGGCUCGU----------CCGGC- -5'
5429 5' -58 NC_001798.1 + 45355 0.66 0.819839
Target:  5'- ---aCGuGGCGAUcGCgGAGCGGGCCc -3'
miRNA:   3'- auggGCuCUGCUA-UGgCUCGUCCGGc -5'
5429 5' -58 NC_001798.1 + 151597 0.66 0.819839
Target:  5'- cUGCCCu-GGCGcucgGCCGGGggcCGGGCCGg -3'
miRNA:   3'- -AUGGGcuCUGCua--UGGCUC---GUCCGGC- -5'
5429 5' -58 NC_001798.1 + 78529 0.66 0.811288
Target:  5'- cGCgCgGAGGCc--ACCGAGCGGGUCa -3'
miRNA:   3'- aUG-GgCUCUGcuaUGGCUCGUCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.