miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5435 5' -60.3 NC_001798.1 + 58983 0.66 0.782351
Target:  5'- cGGCGGccgGGCgaacGCGGg----GGGGGcGCGg -3'
miRNA:   3'- -CCGCCa--CCG----CGCCaaagaCCCCC-UGC- -5'
5435 5' -60.3 NC_001798.1 + 112509 0.66 0.782351
Target:  5'- uGGCGGUGGCGCGaac-----GGGACc -3'
miRNA:   3'- -CCGCCACCGCGCcaaagaccCCCUGc -5'
5435 5' -60.3 NC_001798.1 + 57450 0.66 0.782351
Target:  5'- -uCGGgGGCcCGGUc-UUGGGGGGCGg -3'
miRNA:   3'- ccGCCaCCGcGCCAaaGACCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 6615 0.66 0.782351
Target:  5'- gGGaCGG-GGgGaCGGgccg-GGGGGACGg -3'
miRNA:   3'- -CC-GCCaCCgC-GCCaaagaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 6345 0.66 0.782351
Target:  5'- gGGcCGG-GGgGaCGGgccg-GGGGGACGg -3'
miRNA:   3'- -CC-GCCaCCgC-GCCaaagaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 6319 0.66 0.782351
Target:  5'- gGGcCGG-GGgGaCGGgccg-GGGGGACGg -3'
miRNA:   3'- -CC-GCCaCCgC-GCCaaagaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 6293 0.66 0.782351
Target:  5'- gGGcCGG-GGgGaCGGgccg-GGGGGACGg -3'
miRNA:   3'- -CC-GCCaCCgC-GCCaaagaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 6267 0.66 0.782351
Target:  5'- gGGcCGG-GGgGaCGGgccg-GGGGGACGg -3'
miRNA:   3'- -CC-GCCaCCgC-GCCaaagaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 107395 0.66 0.782351
Target:  5'- cGGCGGgaGGUgGCGGgaggaCUGGGGccggcuGACGg -3'
miRNA:   3'- -CCGCCa-CCG-CGCCaaa--GACCCC------CUGC- -5'
5435 5' -60.3 NC_001798.1 + 30153 0.66 0.773423
Target:  5'- gGGCGGggGGcCGgGGUgag-GGaGGGACa -3'
miRNA:   3'- -CCGCCa-CC-GCgCCAaagaCC-CCCUGc -5'
5435 5' -60.3 NC_001798.1 + 41369 0.66 0.773423
Target:  5'- cGGCGGcucaUGGCGcCGGggauggCcgGGaGGGACa -3'
miRNA:   3'- -CCGCC----ACCGC-GCCaaa---Ga-CC-CCCUGc -5'
5435 5' -60.3 NC_001798.1 + 122110 0.66 0.771624
Target:  5'- cGGCGGggGGCGCuuugccagCcgGGGGGGCc -3'
miRNA:   3'- -CCGCCa-CCGCGccaaa---Ga-CCCCCUGc -5'
5435 5' -60.3 NC_001798.1 + 97223 0.66 0.764379
Target:  5'- cGCGGUGGcCGUGGag-CUGGcgcuguucGGGCGg -3'
miRNA:   3'- cCGCCACC-GCGCCaaaGACCc-------CCUGC- -5'
5435 5' -60.3 NC_001798.1 + 27183 0.66 0.764379
Target:  5'- gGGCcGcgGGCGCGGgg---GGaGGGGCGg -3'
miRNA:   3'- -CCGcCa-CCGCGCCaaagaCC-CCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 125662 0.66 0.764379
Target:  5'- aGGCGG-GG-GCGGcugaggUCaGGGGGGuCGg -3'
miRNA:   3'- -CCGCCaCCgCGCCaa----AGaCCCCCU-GC- -5'
5435 5' -60.3 NC_001798.1 + 138151 0.66 0.755227
Target:  5'- uGCGGUcGCGCccccGGgucCUGGGGGcGCGa -3'
miRNA:   3'- cCGCCAcCGCG----CCaaaGACCCCC-UGC- -5'
5435 5' -60.3 NC_001798.1 + 15744 0.66 0.755227
Target:  5'- uGGCGGUGGC-CGacacagGGaGGGGCGu -3'
miRNA:   3'- -CCGCCACCGcGCcaaagaCC-CCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 6483 0.66 0.755227
Target:  5'- gGGaCGGggGGaCGgGGggacgGGGGGACGg -3'
miRNA:   3'- -CC-GCCa-CC-GCgCCaaagaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 6451 0.66 0.755227
Target:  5'- gGGaCGGggGGaCGgGGggacgGGGGGACGg -3'
miRNA:   3'- -CC-GCCa-CC-GCgCCaaagaCCCCCUGC- -5'
5435 5' -60.3 NC_001798.1 + 6419 0.66 0.755227
Target:  5'- gGGaCGGggGGaCGgGGggacgGGGGGACGg -3'
miRNA:   3'- -CC-GCCa-CC-GCgCCaaagaCCCCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.