miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5439 3' -56.3 NC_001798.1 + 144541 0.66 0.9077
Target:  5'- -cGUCGgGGAGAcccgccguggggGGGCguucgaaaGGGCGaGGACGg -3'
miRNA:   3'- uaCAGUgUCUCU------------UCCG--------CCUGC-CCUGC- -5'
5439 3' -56.3 NC_001798.1 + 154129 0.66 0.901474
Target:  5'- ----gGCGGGGAccccGGCGG-CGGGACa -3'
miRNA:   3'- uacagUGUCUCUu---CCGCCuGCCCUGc -5'
5439 3' -56.3 NC_001798.1 + 148404 0.66 0.901474
Target:  5'- gGUGU-GCGGGcGGGGUGGGCgccGGGGCGg -3'
miRNA:   3'- -UACAgUGUCUcUUCCGCCUG---CCCUGC- -5'
5439 3' -56.3 NC_001798.1 + 107387 0.66 0.901474
Target:  5'- cUGcagCGCGGcGGGAGGUGG-CGGGAgGa -3'
miRNA:   3'- uACa--GUGUC-UCUUCCGCCuGCCCUgC- -5'
5439 3' -56.3 NC_001798.1 + 14971 0.66 0.901474
Target:  5'- cAUGUCcuuaGCgGGAGcuuGGGCGGG-GGGGCGa -3'
miRNA:   3'- -UACAG----UG-UCUCu--UCCGCCUgCCCUGC- -5'
5439 3' -56.3 NC_001798.1 + 2672 0.66 0.901474
Target:  5'- ---cCGCGGcgcGGAGGCGGGCGcGGCGa -3'
miRNA:   3'- uacaGUGUCu--CUUCCGCCUGCcCUGC- -5'
5439 3' -56.3 NC_001798.1 + 105603 0.66 0.901474
Target:  5'- cAUGUUc--GAGGGcGGCGGGCGGG-CGa -3'
miRNA:   3'- -UACAGuguCUCUU-CCGCCUGCCCuGC- -5'
5439 3' -56.3 NC_001798.1 + 75125 0.66 0.901474
Target:  5'- -aGUC-CGGGcAGGGCGG-CGGcGACGa -3'
miRNA:   3'- uaCAGuGUCUcUUCCGCCuGCC-CUGC- -5'
5439 3' -56.3 NC_001798.1 + 28781 0.66 0.895017
Target:  5'- ------aGGAGGAGGCGG-CGGcGGCGg -3'
miRNA:   3'- uacagugUCUCUUCCGCCuGCC-CUGC- -5'
5439 3' -56.3 NC_001798.1 + 31341 0.66 0.895017
Target:  5'- ----gGCGGGGGgcgcgcgcAGGCGcGGCGGGugGg -3'
miRNA:   3'- uacagUGUCUCU--------UCCGC-CUGCCCugC- -5'
5439 3' -56.3 NC_001798.1 + 128241 0.66 0.895017
Target:  5'- cGUGUCGCu--GGAGGCGGcCGGcAUGg -3'
miRNA:   3'- -UACAGUGucuCUUCCGCCuGCCcUGC- -5'
5439 3' -56.3 NC_001798.1 + 149822 0.66 0.888331
Target:  5'- ---cCGCAGAGGaagAGGCGGAgGaGGAgGa -3'
miRNA:   3'- uacaGUGUCUCU---UCCGCCUgC-CCUgC- -5'
5439 3' -56.3 NC_001798.1 + 67192 0.66 0.888331
Target:  5'- ------aGGAGggGGCGGG-GGGACa -3'
miRNA:   3'- uacagugUCUCuuCCGCCUgCCCUGc -5'
5439 3' -56.3 NC_001798.1 + 57443 0.66 0.888331
Target:  5'- gAUGUCuuCGGGGGcccggucuuGGgGGGCGGGGCc -3'
miRNA:   3'- -UACAGu-GUCUCUu--------CCgCCUGCCCUGc -5'
5439 3' -56.3 NC_001798.1 + 6249 0.66 0.888331
Target:  5'- ----gGCGGGGGacGGGgGGACGGGcCGg -3'
miRNA:   3'- uacagUGUCUCU--UCCgCCUGCCCuGC- -5'
5439 3' -56.3 NC_001798.1 + 34084 0.66 0.881419
Target:  5'- uUGUUGgGGGGGGgugaccGGCGcGugGGGGCGg -3'
miRNA:   3'- uACAGUgUCUCUU------CCGC-CugCCCUGC- -5'
5439 3' -56.3 NC_001798.1 + 147005 0.66 0.881419
Target:  5'- uUGcCuCGGGGAcccccGGGCGGGCcGGGGCu -3'
miRNA:   3'- uACaGuGUCUCU-----UCCGCCUG-CCCUGc -5'
5439 3' -56.3 NC_001798.1 + 2517 0.66 0.881419
Target:  5'- -gGcCGCGGcGgcGGCGucGGCGGGGCGg -3'
miRNA:   3'- uaCaGUGUCuCuuCCGC--CUGCCCUGC- -5'
5439 3' -56.3 NC_001798.1 + 123222 0.66 0.874287
Target:  5'- cUGUCGCG----GGGCGGcuACGGGACc -3'
miRNA:   3'- uACAGUGUcucuUCCGCC--UGCCCUGc -5'
5439 3' -56.3 NC_001798.1 + 6669 0.66 0.874287
Target:  5'- --cUCGCAGGccGGGCgccgccuucguGGACGGGACa -3'
miRNA:   3'- uacAGUGUCUcuUCCG-----------CCUGCCCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.