miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5448 3' -60.9 NC_001798.1 + 150272 0.66 0.737537
Target:  5'- cGCgCGCguCGGUCgCGC-CUGCCCgGCCc -3'
miRNA:   3'- -UG-GCGguGCUAG-GCGaGGUGGGaCGG- -5'
5448 3' -60.9 NC_001798.1 + 105288 0.66 0.737537
Target:  5'- gGCCGCCGCGGUCUcCagCGCCUccaggGCg -3'
miRNA:   3'- -UGGCGGUGCUAGGcGagGUGGGa----CGg -5'
5448 3' -60.9 NC_001798.1 + 37370 0.66 0.737537
Target:  5'- -aCGCCAUGGUcauggCCGCaugUCCgACCgaGCCa -3'
miRNA:   3'- ugGCGGUGCUA-----GGCG---AGG-UGGgaCGG- -5'
5448 3' -60.9 NC_001798.1 + 27980 0.66 0.737537
Target:  5'- -gCGCCcCGG--CGCUCCAgCCgUGCCg -3'
miRNA:   3'- ugGCGGuGCUagGCGAGGU-GGgACGG- -5'
5448 3' -60.9 NC_001798.1 + 147301 0.66 0.737537
Target:  5'- gGCCGCC-----CCGCUCCcgggcccgACCCUcGCCc -3'
miRNA:   3'- -UGGCGGugcuaGGCGAGG--------UGGGA-CGG- -5'
5448 3' -60.9 NC_001798.1 + 85298 0.66 0.737537
Target:  5'- --gGCCGgGGUCCGCccgCgGCCC-GCCc -3'
miRNA:   3'- uggCGGUgCUAGGCGa--GgUGGGaCGG- -5'
5448 3' -60.9 NC_001798.1 + 49668 0.66 0.737537
Target:  5'- uGCgGCC-CGAUCUGUUCgacgGCCuCUGCUg -3'
miRNA:   3'- -UGgCGGuGCUAGGCGAGg---UGG-GACGG- -5'
5448 3' -60.9 NC_001798.1 + 19325 0.66 0.737537
Target:  5'- cGCUgGCUACGGUCCcucgugGCUCCucacaacaaACCCcGCCc -3'
miRNA:   3'- -UGG-CGGUGCUAGG------CGAGG---------UGGGaCGG- -5'
5448 3' -60.9 NC_001798.1 + 140 0.66 0.728085
Target:  5'- gGCCGCUcccccGCGGgcgCCGCcccUCCcCCCgcgcGCCg -3'
miRNA:   3'- -UGGCGG-----UGCUa--GGCG---AGGuGGGa---CGG- -5'
5448 3' -60.9 NC_001798.1 + 107324 0.66 0.728085
Target:  5'- gACCugGCCAUGcuGUCCGCcaUUCGCCgUGUCu -3'
miRNA:   3'- -UGG--CGGUGC--UAGGCG--AGGUGGgACGG- -5'
5448 3' -60.9 NC_001798.1 + 154478 0.66 0.728085
Target:  5'- gGCCGCUcccccGCGGgcgCCGCcccUCCcCCCgcgcGCCg -3'
miRNA:   3'- -UGGCGG-----UGCUa--GGCG---AGGuGGGa---CGG- -5'
5448 3' -60.9 NC_001798.1 + 117299 0.66 0.724281
Target:  5'- cCCGCCACGAaacgggcgggggggUCaacuucaCGCU-CACCCaGCCg -3'
miRNA:   3'- uGGCGGUGCU--------------AG-------GCGAgGUGGGaCGG- -5'
5448 3' -60.9 NC_001798.1 + 138175 0.66 0.718555
Target:  5'- --gGgCGCGAcCCGCggccggugCCGCCCuUGCCg -3'
miRNA:   3'- uggCgGUGCUaGGCGa-------GGUGGG-ACGG- -5'
5448 3' -60.9 NC_001798.1 + 3514 0.66 0.718555
Target:  5'- gGCCGCCACG-UgCGC-CagGCCCcaGCCg -3'
miRNA:   3'- -UGGCGGUGCuAgGCGaGg-UGGGa-CGG- -5'
5448 3' -60.9 NC_001798.1 + 86556 0.66 0.718555
Target:  5'- gACC-CCugGGUCCuGUuuggCCACCCccgcGCCg -3'
miRNA:   3'- -UGGcGGugCUAGG-CGa---GGUGGGa---CGG- -5'
5448 3' -60.9 NC_001798.1 + 138733 0.66 0.718555
Target:  5'- gGCCGgCGCGcUCCGCggCCccggcgaccgugGCCagCUGCCg -3'
miRNA:   3'- -UGGCgGUGCuAGGCGa-GG------------UGG--GACGG- -5'
5448 3' -60.9 NC_001798.1 + 18605 0.66 0.718555
Target:  5'- cCCGgguCCGCGcgCCGUcCCGCCgUGCa -3'
miRNA:   3'- uGGC---GGUGCuaGGCGaGGUGGgACGg -5'
5448 3' -60.9 NC_001798.1 + 71819 0.66 0.708957
Target:  5'- cCCgGCCACG--CCGCugUCCGCgCUGCUc -3'
miRNA:   3'- uGG-CGGUGCuaGGCG--AGGUGgGACGG- -5'
5448 3' -60.9 NC_001798.1 + 115287 0.66 0.708957
Target:  5'- aACCcgGCCAUGGagCGCUUCGCCgCgcacGCCg -3'
miRNA:   3'- -UGG--CGGUGCUagGCGAGGUGG-Ga---CGG- -5'
5448 3' -60.9 NC_001798.1 + 82163 0.66 0.708957
Target:  5'- aGCCGaCCACGcggCCGCgguuUCCGCCgCagcggcggcagUGCCg -3'
miRNA:   3'- -UGGC-GGUGCua-GGCG----AGGUGG-G-----------ACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.