Results 1 - 20 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5448 | 3' | -60.9 | NC_001798.1 | + | 105288 | 0.66 | 0.737537 |
Target: 5'- gGCCGCCGCGGUCUcCagCGCCUccaggGCg -3' miRNA: 3'- -UGGCGGUGCUAGGcGagGUGGGa----CGg -5' |
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5448 | 3' | -60.9 | NC_001798.1 | + | 37370 | 0.66 | 0.737537 |
Target: 5'- -aCGCCAUGGUcauggCCGCaugUCCgACCgaGCCa -3' miRNA: 3'- ugGCGGUGCUA-----GGCG---AGG-UGGgaCGG- -5' |
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5448 | 3' | -60.9 | NC_001798.1 | + | 27980 | 0.66 | 0.737537 |
Target: 5'- -gCGCCcCGG--CGCUCCAgCCgUGCCg -3' miRNA: 3'- ugGCGGuGCUagGCGAGGU-GGgACGG- -5' |
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5448 | 3' | -60.9 | NC_001798.1 | + | 147301 | 0.66 | 0.737537 |
Target: 5'- gGCCGCC-----CCGCUCCcgggcccgACCCUcGCCc -3' miRNA: 3'- -UGGCGGugcuaGGCGAGG--------UGGGA-CGG- -5' |
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5448 | 3' | -60.9 | NC_001798.1 | + | 85298 | 0.66 | 0.737537 |
Target: 5'- --gGCCGgGGUCCGCccgCgGCCC-GCCc -3' miRNA: 3'- uggCGGUgCUAGGCGa--GgUGGGaCGG- -5' |
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5448 | 3' | -60.9 | NC_001798.1 | + | 49668 | 0.66 | 0.737537 |
Target: 5'- uGCgGCC-CGAUCUGUUCgacgGCCuCUGCUg -3' miRNA: 3'- -UGgCGGuGCUAGGCGAGg---UGG-GACGG- -5' |
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5448 | 3' | -60.9 | NC_001798.1 | + | 19325 | 0.66 | 0.737537 |
Target: 5'- cGCUgGCUACGGUCCcucgugGCUCCucacaacaaACCCcGCCc -3' miRNA: 3'- -UGG-CGGUGCUAGG------CGAGG---------UGGGaCGG- -5' |
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5448 | 3' | -60.9 | NC_001798.1 | + | 150272 | 0.66 | 0.737537 |
Target: 5'- cGCgCGCguCGGUCgCGC-CUGCCCgGCCc -3' miRNA: 3'- -UG-GCGguGCUAG-GCGaGGUGGGaCGG- -5' |
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5448 | 3' | -60.9 | NC_001798.1 | + | 140 | 0.66 | 0.728085 |
Target: 5'- gGCCGCUcccccGCGGgcgCCGCcccUCCcCCCgcgcGCCg -3' miRNA: 3'- -UGGCGG-----UGCUa--GGCG---AGGuGGGa---CGG- -5' |
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5448 | 3' | -60.9 | NC_001798.1 | + | 107324 | 0.66 | 0.728085 |
Target: 5'- gACCugGCCAUGcuGUCCGCcaUUCGCCgUGUCu -3' miRNA: 3'- -UGG--CGGUGC--UAGGCG--AGGUGGgACGG- -5' |
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5448 | 3' | -60.9 | NC_001798.1 | + | 154478 | 0.66 | 0.728085 |
Target: 5'- gGCCGCUcccccGCGGgcgCCGCcccUCCcCCCgcgcGCCg -3' miRNA: 3'- -UGGCGG-----UGCUa--GGCG---AGGuGGGa---CGG- -5' |
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5448 | 3' | -60.9 | NC_001798.1 | + | 117299 | 0.66 | 0.724281 |
Target: 5'- cCCGCCACGAaacgggcgggggggUCaacuucaCGCU-CACCCaGCCg -3' miRNA: 3'- uGGCGGUGCU--------------AG-------GCGAgGUGGGaCGG- -5' |
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5448 | 3' | -60.9 | NC_001798.1 | + | 18605 | 0.66 | 0.718555 |
Target: 5'- cCCGgguCCGCGcgCCGUcCCGCCgUGCa -3' miRNA: 3'- uGGC---GGUGCuaGGCGaGGUGGgACGg -5' |
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5448 | 3' | -60.9 | NC_001798.1 | + | 138733 | 0.66 | 0.718555 |
Target: 5'- gGCCGgCGCGcUCCGCggCCccggcgaccgugGCCagCUGCCg -3' miRNA: 3'- -UGGCgGUGCuAGGCGa-GG------------UGG--GACGG- -5' |
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5448 | 3' | -60.9 | NC_001798.1 | + | 86556 | 0.66 | 0.718555 |
Target: 5'- gACC-CCugGGUCCuGUuuggCCACCCccgcGCCg -3' miRNA: 3'- -UGGcGGugCUAGG-CGa---GGUGGGa---CGG- -5' |
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5448 | 3' | -60.9 | NC_001798.1 | + | 3514 | 0.66 | 0.718555 |
Target: 5'- gGCCGCCACG-UgCGC-CagGCCCcaGCCg -3' miRNA: 3'- -UGGCGGUGCuAgGCGaGg-UGGGa-CGG- -5' |
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5448 | 3' | -60.9 | NC_001798.1 | + | 138175 | 0.66 | 0.718555 |
Target: 5'- --gGgCGCGAcCCGCggccggugCCGCCCuUGCCg -3' miRNA: 3'- uggCgGUGCUaGGCGa-------GGUGGG-ACGG- -5' |
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5448 | 3' | -60.9 | NC_001798.1 | + | 141481 | 0.66 | 0.708957 |
Target: 5'- gGCuCGCCGCGcggggggcugauGUCCGUg--GCCCUGCa -3' miRNA: 3'- -UG-GCGGUGC------------UAGGCGaggUGGGACGg -5' |
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5448 | 3' | -60.9 | NC_001798.1 | + | 71819 | 0.66 | 0.708957 |
Target: 5'- cCCgGCCACG--CCGCugUCCGCgCUGCUc -3' miRNA: 3'- uGG-CGGUGCuaGGCG--AGGUGgGACGG- -5' |
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5448 | 3' | -60.9 | NC_001798.1 | + | 115287 | 0.66 | 0.708957 |
Target: 5'- aACCcgGCCAUGGagCGCUUCGCCgCgcacGCCg -3' miRNA: 3'- -UGG--CGGUGCUagGCGAGGUGG-Ga---CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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