miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5448 5' -55.3 NC_001798.1 + 154092 0.66 0.943931
Target:  5'- gGAGC--GCCGGG-GCG-CgGCCGGCg -3'
miRNA:   3'- gCUCGucUGGCUCaUGUaGaCGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 49422 0.66 0.943931
Target:  5'- aGAGCuaccGGACCGuGUugGCAaauuUUUGCuCGGCc -3'
miRNA:   3'- gCUCG----UCUGGCuCA--UGU----AGACG-GCCG- -5'
5448 5' -55.3 NC_001798.1 + 37397 0.66 0.943931
Target:  5'- cCGAGCc-ACCGGGcGgGUCcgugggGCCGGCc -3'
miRNA:   3'- -GCUCGucUGGCUCaUgUAGa-----CGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 146701 0.66 0.943931
Target:  5'- gCGcGCAG-CUGAGUGCucugcggUUGCgGGCg -3'
miRNA:   3'- -GCuCGUCuGGCUCAUGua-----GACGgCCG- -5'
5448 5' -55.3 NC_001798.1 + 46182 0.66 0.943931
Target:  5'- -uAGCAGGCCucuGGUcCGUCgGCCGcGCg -3'
miRNA:   3'- gcUCGUCUGGc--UCAuGUAGaCGGC-CG- -5'
5448 5' -55.3 NC_001798.1 + 1439 0.66 0.94348
Target:  5'- aGGcGCGGugCGAGUGCGcCUcguccucgcagaaGuCCGGCg -3'
miRNA:   3'- gCU-CGUCugGCUCAUGUaGA-------------C-GGCCG- -5'
5448 5' -55.3 NC_001798.1 + 95452 0.66 0.939323
Target:  5'- --uGCAGAUCGAGgACug--GCUGGCg -3'
miRNA:   3'- gcuCGUCUGGCUCaUGuagaCGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 95353 0.66 0.939323
Target:  5'- gCGAGCAGcuCCGGG-GCAUCauUGCggagggcggggCGGCg -3'
miRNA:   3'- -GCUCGUCu-GGCUCaUGUAG--ACG-----------GCCG- -5'
5448 5' -55.3 NC_001798.1 + 108856 0.66 0.938849
Target:  5'- aCGGGCGGGCuggcguuCGGGUGCGaC-GCCGcGCu -3'
miRNA:   3'- -GCUCGUCUG-------GCUCAUGUaGaCGGC-CG- -5'
5448 5' -55.3 NC_001798.1 + 53188 0.66 0.937894
Target:  5'- cCGAGCGGcgcaucuucGCCGGGU--GUCUGCUccccaccccggaggGGCu -3'
miRNA:   3'- -GCUCGUC---------UGGCUCAugUAGACGG--------------CCG- -5'
5448 5' -55.3 NC_001798.1 + 113949 0.66 0.934478
Target:  5'- -uGGCGGcCCGugGGUuguuagucGCGUCcGCCGGCg -3'
miRNA:   3'- gcUCGUCuGGC--UCA--------UGUAGaCGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 61843 0.66 0.934478
Target:  5'- cCGGG-GGACCGGGgaacGCGggCcGCCGGCc -3'
miRNA:   3'- -GCUCgUCUGGCUCa---UGUa-GaCGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 71708 0.66 0.934478
Target:  5'- uGAGaCGG-CCGAGcGCcgCUucagcGCCGGCc -3'
miRNA:   3'- gCUC-GUCuGGCUCaUGuaGA-----CGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 25629 0.66 0.931457
Target:  5'- gGAGUGGuccGCCGAGcGCGgcgggcuguccugcCUGCUGGCg -3'
miRNA:   3'- gCUCGUC---UGGCUCaUGUa-------------GACGGCCG- -5'
5448 5' -55.3 NC_001798.1 + 112863 0.66 0.929395
Target:  5'- cCGGGCccaacGGCCGAGguuUAUAUCcUGCUGGg -3'
miRNA:   3'- -GCUCGu----CUGGCUC---AUGUAG-ACGGCCg -5'
5448 5' -55.3 NC_001798.1 + 150560 0.66 0.929395
Target:  5'- aGAGCGGcCCGGGgcCcgCggGgCGGCg -3'
miRNA:   3'- gCUCGUCuGGCUCauGuaGa-CgGCCG- -5'
5448 5' -55.3 NC_001798.1 + 135412 0.66 0.929395
Target:  5'- uCGAGCAGACgGccagcucggugaAGUuuGCgGUCUGCggCGGCa -3'
miRNA:   3'- -GCUCGUCUGgC------------UCA--UG-UAGACG--GCCG- -5'
5448 5' -55.3 NC_001798.1 + 153073 0.66 0.929395
Target:  5'- gGGGCGGGCgGAGcgGCGgggCggcGCCGGg -3'
miRNA:   3'- gCUCGUCUGgCUCa-UGUa--Ga--CGGCCg -5'
5448 5' -55.3 NC_001798.1 + 64769 0.66 0.929395
Target:  5'- --cGCAGGCCGuGUuuCAUCaUGCUcuGGCg -3'
miRNA:   3'- gcuCGUCUGGCuCAu-GUAG-ACGG--CCG- -5'
5448 5' -55.3 NC_001798.1 + 2955 0.66 0.929395
Target:  5'- gCGcGCAGGCgGGGcGCGUCgGCgugCGGCg -3'
miRNA:   3'- -GCuCGUCUGgCUCaUGUAGaCG---GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.