miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5450 3' -60.3 NC_001798.1 + 134264 0.66 0.73083
Target:  5'- -uGGCGGCCCUGGagcGCCAgacGGGCcggUGGg -3'
miRNA:   3'- ucCCGCCGGGGCU---UGGU---CCUGa--ACUa -5'
5450 3' -60.3 NC_001798.1 + 2984 0.66 0.73083
Target:  5'- cGGGGCggccggcccgcgGGCCCCGGgcGCgGGGGCg---- -3'
miRNA:   3'- -UCCCG------------CCGGGGCU--UGgUCCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 53179 0.66 0.729866
Target:  5'- cGGGCGuCCCCGAgcggcgcaucuucGCCGGGugUc--- -3'
miRNA:   3'- uCCCGCcGGGGCU-------------UGGUCCugAacua -5'
5450 3' -60.3 NC_001798.1 + 123228 0.66 0.721149
Target:  5'- cGGGGCGGCUaCgGGACCcGGcCUUGu- -3'
miRNA:   3'- -UCCCGCCGG-GgCUUGGuCCuGAACua -5'
5450 3' -60.3 NC_001798.1 + 109568 0.66 0.721149
Target:  5'- -cGGUGGCCCCGAGCgCGGcccGCcUGAUc -3'
miRNA:   3'- ucCCGCCGGGGCUUG-GUCc--UGaACUA- -5'
5450 3' -60.3 NC_001798.1 + 60882 0.66 0.721149
Target:  5'- gGGGGCGGCggCCGcaccGCCGGGAagaUGAg -3'
miRNA:   3'- -UCCCGCCGg-GGCu---UGGUCCUga-ACUa -5'
5450 3' -60.3 NC_001798.1 + 54295 0.66 0.721149
Target:  5'- cGGGGCcgcccuGGCCCCGGACCugcuucGGAgcgGAa -3'
miRNA:   3'- -UCCCG------CCGGGGCUUGGu-----CCUgaaCUa -5'
5450 3' -60.3 NC_001798.1 + 83787 0.66 0.721149
Target:  5'- cGGGgGG-CCCGGACgCGGGGCccgGAa -3'
miRNA:   3'- uCCCgCCgGGGCUUG-GUCCUGaa-CUa -5'
5450 3' -60.3 NC_001798.1 + 72504 0.66 0.711395
Target:  5'- uGGGGCccuggcGCCCCGAgGCCAuGGGCgacgcggUGAg -3'
miRNA:   3'- -UCCCGc-----CGGGGCU-UGGU-CCUGa------ACUa -5'
5450 3' -60.3 NC_001798.1 + 114492 0.66 0.711395
Target:  5'- gGGGGaGGCCCUGGA-CGGGACg---- -3'
miRNA:   3'- -UCCCgCCGGGGCUUgGUCCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 27559 0.66 0.711395
Target:  5'- aGGGGCGGCgCCCGcgggggagcGGCCggcuccgggggaGGGACgggGAa -3'
miRNA:   3'- -UCCCGCCG-GGGC---------UUGG------------UCCUGaa-CUa -5'
5450 3' -60.3 NC_001798.1 + 123922 0.66 0.701576
Target:  5'- cGGGGCGugcuguGCCCUGggUCcgGGGGCcUGGUg -3'
miRNA:   3'- -UCCCGC------CGGGGCuuGG--UCCUGaACUA- -5'
5450 3' -60.3 NC_001798.1 + 59791 0.66 0.701576
Target:  5'- cGGGCGGUaCCCGGGCCuGGccCUcGAg -3'
miRNA:   3'- uCCCGCCG-GGGCUUGGuCCu-GAaCUa -5'
5450 3' -60.3 NC_001798.1 + 56003 0.66 0.701576
Target:  5'- aGGGGCugguaggcgGGUCCCGAagcacggaaaGCCAuagcaccaccgcGGGCUUGAa -3'
miRNA:   3'- -UCCCG---------CCGGGGCU----------UGGU------------CCUGAACUa -5'
5450 3' -60.3 NC_001798.1 + 66862 0.66 0.6917
Target:  5'- cGGGGa-GUCgCCGGggcGCCGGGGCUUGGg -3'
miRNA:   3'- -UCCCgcCGG-GGCU---UGGUCCUGAACUa -5'
5450 3' -60.3 NC_001798.1 + 28861 0.66 0.6917
Target:  5'- gAGGGCGGCCUCG-GCCGGcGGagccccgGAg -3'
miRNA:   3'- -UCCCGCCGGGGCuUGGUC-CUgaa----CUa -5'
5450 3' -60.3 NC_001798.1 + 13081 0.66 0.6917
Target:  5'- gAGGcGCGGgCCCGGugcuCCAGGAUa---- -3'
miRNA:   3'- -UCC-CGCCgGGGCUu---GGUCCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 123409 0.66 0.681777
Target:  5'- cGGGagccGCGGCCCCGccgggucACCGGGGCg---- -3'
miRNA:   3'- -UCC----CGCCGGGGCu------UGGUCCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 43524 0.66 0.681777
Target:  5'- aGGcGGCGGCCgCGucucccGCCAGGGCg---- -3'
miRNA:   3'- -UC-CCGCCGGgGCu-----UGGUCCUGaacua -5'
5450 3' -60.3 NC_001798.1 + 34735 0.66 0.681777
Target:  5'- gAGGGUcgGGCCCgGGAgCGGGGCg---- -3'
miRNA:   3'- -UCCCG--CCGGGgCUUgGUCCUGaacua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.