miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5450 5' -64.3 NC_001798.1 + 76076 0.66 0.578713
Target:  5'- -gAUCCaGGCCC-GC-CGGGcgaucgagagcGCGGUCa -3'
miRNA:   3'- ggUAGGcCCGGGuCGaGCCC-----------CGCCAG- -5'
5450 5' -64.3 NC_001798.1 + 91954 0.66 0.569197
Target:  5'- cCCAaccCCGGGCCCccccguccGGCgcgaucCGGuGGCGGg- -3'
miRNA:   3'- -GGUa--GGCCCGGG--------UCGa-----GCC-CCGCCag -5'
5450 5' -64.3 NC_001798.1 + 36139 0.66 0.569197
Target:  5'- uCCcgCCggugGGGCgCGGCggcggUCGGGGUGGg- -3'
miRNA:   3'- -GGuaGG----CCCGgGUCG-----AGCCCCGCCag -5'
5450 5' -64.3 NC_001798.1 + 28661 0.66 0.569197
Target:  5'- aCCGguUCCGGcGCCgCguGGCggCGGccgaGGCGGUCa -3'
miRNA:   3'- -GGU--AGGCC-CGG-G--UCGa-GCC----CCGCCAG- -5'
5450 5' -64.3 NC_001798.1 + 5037 0.66 0.55972
Target:  5'- uCCGaCCGGGgUguGCgggGGGGgGGUCu -3'
miRNA:   3'- -GGUaGGCCCgGguCGag-CCCCgCCAG- -5'
5450 5' -64.3 NC_001798.1 + 132144 0.66 0.55972
Target:  5'- gCCGcCgGGGgCCGGCgggCGGGGCGc-- -3'
miRNA:   3'- -GGUaGgCCCgGGUCGa--GCCCCGCcag -5'
5450 5' -64.3 NC_001798.1 + 7044 0.66 0.55972
Target:  5'- gCAUCCGGgguuuccccgGCCCAcccccaaaccccGgUUGGGGCGGg- -3'
miRNA:   3'- gGUAGGCC----------CGGGU------------CgAGCCCCGCCag -5'
5450 5' -64.3 NC_001798.1 + 71555 0.66 0.551228
Target:  5'- -gAUCCaGGGCgCCAGCgagcacacgcacgggCGGcucugugaGGCGGUCg -3'
miRNA:   3'- ggUAGG-CCCG-GGUCGa--------------GCC--------CCGCCAG- -5'
5450 5' -64.3 NC_001798.1 + 105596 0.66 0.540904
Target:  5'- ----aCGGGUCCAuGUUCGaGGGCGG-Cg -3'
miRNA:   3'- gguagGCCCGGGU-CGAGC-CCCGCCaG- -5'
5450 5' -64.3 NC_001798.1 + 58979 0.66 0.540904
Target:  5'- gCGUCgGcGGCCgGGCgaacgCGGGGgGGg- -3'
miRNA:   3'- gGUAGgC-CCGGgUCGa----GCCCCgCCag -5'
5450 5' -64.3 NC_001798.1 + 17960 0.66 0.540904
Target:  5'- cCCGUUCGcaGGUCCGGacgUCGGGGgGGg- -3'
miRNA:   3'- -GGUAGGC--CCGGGUCg--AGCCCCgCCag -5'
5450 5' -64.3 NC_001798.1 + 51173 0.66 0.540904
Target:  5'- gCGUCCGaGGCCCGGg-CGGcGGCGc-- -3'
miRNA:   3'- gGUAGGC-CCGGGUCgaGCC-CCGCcag -5'
5450 5' -64.3 NC_001798.1 + 152216 0.66 0.540904
Target:  5'- aCCGUgCCGGGggucugCCGcggcggccGCUCGGGGCcggGGUCc -3'
miRNA:   3'- -GGUA-GGCCCg-----GGU--------CGAGCCCCG---CCAG- -5'
5450 5' -64.3 NC_001798.1 + 23804 0.66 0.540904
Target:  5'- gCCGUggcCCGGGgCCGGCcccccgccccCGGGGCGcGUg -3'
miRNA:   3'- -GGUA---GGCCCgGGUCGa---------GCCCCGC-CAg -5'
5450 5' -64.3 NC_001798.1 + 101803 0.66 0.539968
Target:  5'- uCCGcgCCGGGCgCCucggguugggguaAGCUCGcGGCGGg- -3'
miRNA:   3'- -GGUa-GGCCCG-GG-------------UCGAGCcCCGCCag -5'
5450 5' -64.3 NC_001798.1 + 54371 0.66 0.539968
Target:  5'- gCGUCC-GGCCCaccggggGGCcgCGGcGCGGUCg -3'
miRNA:   3'- gGUAGGcCCGGG-------UCGa-GCCcCGCCAG- -5'
5450 5' -64.3 NC_001798.1 + 12680 0.66 0.539968
Target:  5'- gCCAgcgcgCCGaugaucaGGCCCGgguuGCUgGGGGCGG-Cg -3'
miRNA:   3'- -GGUa----GGC-------CCGGGU----CGAgCCCCGCCaG- -5'
5450 5' -64.3 NC_001798.1 + 76925 0.67 0.526005
Target:  5'- gCCGUCCGGgGCCCccccccggaagucacGGCggCGcugcGGGCGGa- -3'
miRNA:   3'- -GGUAGGCC-CGGG---------------UCGa-GC----CCCGCCag -5'
5450 5' -64.3 NC_001798.1 + 129353 0.67 0.522305
Target:  5'- gCCcgCCGGGCCUGGC--GGGGCccccGGa- -3'
miRNA:   3'- -GGuaGGCCCGGGUCGagCCCCG----CCag -5'
5450 5' -64.3 NC_001798.1 + 39413 0.67 0.522305
Target:  5'- uCCGggaCCGGGgCgCGGCcguccgcgugCGGGGgGGUCa -3'
miRNA:   3'- -GGUa--GGCCCgG-GUCGa---------GCCCCgCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.