miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5452 3' -62.5 NC_001798.1 + 67615 0.66 0.665428
Target:  5'- cCGCGcuCCGGCGAgggcggaugCGGCaGGGCg-- -3'
miRNA:   3'- -GUGCuuGGCCGCUa--------GCCGcCCCGggu -5'
5452 3' -62.5 NC_001798.1 + 25598 0.66 0.665428
Target:  5'- cCGCGGGCCGcGCcGggGGCG-GGCCCc -3'
miRNA:   3'- -GUGCUUGGC-CGcUagCCGCcCCGGGu -5'
5452 3' -62.5 NC_001798.1 + 15206 0.66 0.665428
Target:  5'- gGCGAGCCGGgGGgagCGucCGcGGGUCCGu -3'
miRNA:   3'- gUGCUUGGCCgCUa--GCc-GC-CCCGGGU- -5'
5452 3' -62.5 NC_001798.1 + 12023 0.66 0.665428
Target:  5'- aACGccaCGGCGGggCGGCGGGGgCa- -3'
miRNA:   3'- gUGCuugGCCGCUa-GCCGCCCCgGgu -5'
5452 3' -62.5 NC_001798.1 + 8878 0.66 0.665428
Target:  5'- aCGCGGaagggcGCUGGCGGagGGCGGaGGCg-- -3'
miRNA:   3'- -GUGCU------UGGCCGCUagCCGCC-CCGggu -5'
5452 3' -62.5 NC_001798.1 + 34957 0.66 0.665428
Target:  5'- gCGCGGcGCCGGaggGggCGGCcgccgaggugcgGGGGCCCc -3'
miRNA:   3'- -GUGCU-UGGCCg--CuaGCCG------------CCCCGGGu -5'
5452 3' -62.5 NC_001798.1 + 77248 0.66 0.665428
Target:  5'- gGCGGACgCGGUG-UCGGCccuGGGCgCGg -3'
miRNA:   3'- gUGCUUG-GCCGCuAGCCGc--CCCGgGU- -5'
5452 3' -62.5 NC_001798.1 + 110266 0.66 0.655723
Target:  5'- -cCGAaaACCGGCGcgaccUCGGCcucgugGGGGCCg- -3'
miRNA:   3'- guGCU--UGGCCGCu----AGCCG------CCCCGGgu -5'
5452 3' -62.5 NC_001798.1 + 5858 0.66 0.655723
Target:  5'- uGCGAgcACUGGCGccCuGCccGGGGCCCGc -3'
miRNA:   3'- gUGCU--UGGCCGCuaGcCG--CCCCGGGU- -5'
5452 3' -62.5 NC_001798.1 + 152044 0.66 0.655723
Target:  5'- --aGggUCGGgGggCGGCGcacGGCCCAc -3'
miRNA:   3'- gugCuuGGCCgCuaGCCGCc--CCGGGU- -5'
5452 3' -62.5 NC_001798.1 + 44483 0.66 0.655723
Target:  5'- aCAUGGGCCGGgugcgcccuuuCGggUGGUGGGucacGCCCAc -3'
miRNA:   3'- -GUGCUUGGCC-----------GCuaGCCGCCC----CGGGU- -5'
5452 3' -62.5 NC_001798.1 + 64356 0.66 0.655723
Target:  5'- gGCGGACCagGGUGGa-GGCGGGGagcguCCCGu -3'
miRNA:   3'- gUGCUUGG--CCGCUagCCGCCCC-----GGGU- -5'
5452 3' -62.5 NC_001798.1 + 65271 0.66 0.655723
Target:  5'- gUugGAGCCGGCGAU-GGCc--GCCCc -3'
miRNA:   3'- -GugCUUGGCCGCUAgCCGcccCGGGu -5'
5452 3' -62.5 NC_001798.1 + 83779 0.66 0.655723
Target:  5'- --aGAagcGCCGGgGGgccCGgacGCGGGGCCCGg -3'
miRNA:   3'- gugCU---UGGCCgCUa--GC---CGCCCCGGGU- -5'
5452 3' -62.5 NC_001798.1 + 121534 0.66 0.655723
Target:  5'- aCACGGuCgCGGCGcugCGccuggcGUGGGGCCCGu -3'
miRNA:   3'- -GUGCUuG-GCCGCua-GC------CGCCCCGGGU- -5'
5452 3' -62.5 NC_001798.1 + 23654 0.66 0.655723
Target:  5'- cCugGAgcgccGCCGGgccCGcgCGGCGGuGGCCg- -3'
miRNA:   3'- -GugCU-----UGGCC---GCuaGCCGCC-CCGGgu -5'
5452 3' -62.5 NC_001798.1 + 69543 0.66 0.655723
Target:  5'- gCGCGGGCUGGUGGUgguuuccaCGGCacucucGGCCCAc -3'
miRNA:   3'- -GUGCUUGGCCGCUA--------GCCGcc----CCGGGU- -5'
5452 3' -62.5 NC_001798.1 + 34610 0.66 0.646001
Target:  5'- aCGCGGGCaaagggCGGCGG-CGGCGGGGg--- -3'
miRNA:   3'- -GUGCUUG------GCCGCUaGCCGCCCCgggu -5'
5452 3' -62.5 NC_001798.1 + 120629 0.66 0.646001
Target:  5'- gACGGGCCGGUcGUCGccggucucGCGGGccuGCCCc -3'
miRNA:   3'- gUGCUUGGCCGcUAGC--------CGCCC---CGGGu -5'
5452 3' -62.5 NC_001798.1 + 96012 0.66 0.636269
Target:  5'- cCGCGAAUcaCGGCacacCGGCGGGGCg-- -3'
miRNA:   3'- -GUGCUUG--GCCGcua-GCCGCCCCGggu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.